Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq82763 138 2e-27 >seq82763 Length=7752 Score = 138 bits (152), Expect = 2e-27 Identities = 217/306 (71%), Gaps = 6/306 (2%) Strand=Plus/Plus Query 189280 AATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTAT 189339 |||| || |||||||| |||||||||||||||||| ||| || ||| ||||||||| ||| Sbjct 3998 AATTATACGAAGAGAATTATCGGATAATTTTTGTTTCTACAATAAAAATTATGATAATAT 4057 Query 189340 CCA--GTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGA 189397 | | || | | | ||||| |||||| | | || || || ||| || Sbjct 4058 CAAAGGTGTTGCAAGT--TGGGCTTTAAAAACTCTTAATGAACATCGAAAAGATAAACGA 4115 Query 189398 AAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAAC 189457 | ||||| || | | | || | ||| | ||||||||||| ||| ||||| Sbjct 4116 AGTTATATTTACACAAAAGATGAATTAGAATGCTCAAAAACTCATGATGATCTCTGGAAT 4175 Query 189458 GCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGG 189517 | | ||||| || |||| |||||||||||||||| |||||||| ||||||||||| Sbjct 4176 TCAGCTCAAATTCAATTGGTACAAGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGG 4235 Query 189518 GCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAG-TATCTA 189576 |||||||| || | ||||||||| | |||||||| | || || || || | || || Sbjct 4236 GCTAAGAAAATTTTAGAATGGACTGAATCACCTGAAAAAGCATT-AGAAATTGCAATTTA 4294 Query 189577 TTTGAA 189582 |||||| Sbjct 4295 TTTGAA 4300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921658592571760