Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq26843 104 3e-17 seq102307 96.9 4e-15 seq77121 86.0 7e-12 seq3844 82.4 9e-11 >seq26843 Length=8439 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2847 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2788 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 2787 TACTACCGAGGA 2776 >seq102307 Length=8650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/72 (90%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||||||||||||||| || ||||| ||||||| Sbjct 7733 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGNGG--ATACTTACCACTA 7790 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 7791 TACTACCGAGGA 7802 >seq77121 Length=3029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2590 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2649 Query 60126 TA 60127 || Sbjct 2650 TA 2651 >seq3844 Length=16982 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 8160 AAAAATCACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8219 Query 60117 TCACCACT 60124 | |||||| Sbjct 8220 TTACCACT 8227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570864851810320