Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq26843 104 3e-17
seq102307 96.9 4e-15
seq77121 86.0 7e-12
seq3844 82.4 9e-11
>seq26843
Length=8439
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2847 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2788
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 2787 TACTACCGAGGA 2776
>seq102307
Length=8650
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/72 (90%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||||||||||||||||| || ||||| |||||||
Sbjct 7733 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGNGG--ATACTTACCACTA 7790
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 7791 TACTACCGAGGA 7802
>seq77121
Length=3029
Score = 86.0 bits (94), Expect = 7e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2590 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2649
Query 60126 TA 60127
||
Sbjct 2650 TA 2651
>seq3844
Length=16982
Score = 82.4 bits (90), Expect = 9e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 8160 AAAAATCACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8219
Query 60117 TCACCACT 60124
| ||||||
Sbjct 8220 TTACCACT 8227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570864851810320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |