Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq28819 181 2e-40
seq111888 105 1e-17
seq34035 98.7 1e-15
seq116239 87.8 3e-12
>seq28819
Length=13211
Score = 181 bits (200), Expect = 2e-40
Identities = 236/324 (73%), Gaps = 2/324 (1%)
Strand=Plus/Plus
Query 10305 GAAAATGCTTTTGAACCTATTAGACAGA-CATCAAAATCTGCAGGAATGGATTTAAAAAG 10363
|||||||| |||| || | || | || || |||| | || ||| | |||||||||||
Sbjct 8019 GAAAATGCATTTGCCCC-AGTAAAGGGATCAGTAAAAGCAGCTGGATTTGATTTAAAAAG 8077
Query 10364 TGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTAT 10423
|||||| ||||||| |||| |||| | | ||| ||||||| |||||||||||| ||
Sbjct 8078 TGCATACGATTATAATGTTCCAGCTAAAGGGAAAGAATTAATTAAAACTGATTTACAAAT 8137
Query 10424 AGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAA 10483
| | || |||| | ||||| | | |||| || | |||| | ||| |||| ||
Sbjct 8138 TCATGTACCAGAAGGTTCTTATGGACGTATAGCACCACGTTCTGGACTTGCTGTAAAAAA 8197
Query 10484 ATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAAT 10543
|| |||||| ||||||| || ||| | || || |||||| | |||||| | || || |
Sbjct 8198 TTTCATTGATGTTGGAGCCGGTGTAGTGGATGAGGATTATCGTGGAAATTTAGGTGTTGT 8257
Query 10544 ATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATT 10603
|||||||||||||||| | | |||||| | |||| | || ||| |||| | |||||
Sbjct 8258 ATTATTTAATCATTCTGAAAATGATTTTCAAGTAAAACGTGGTGATCGAATTGCACAATT 8317
Query 10604 AATATGTGAAAAAATTTTATATCC 10627
|| || |||| |||||| |||||
Sbjct 8318 GATTTGCGAAAGAATTTTTTATCC 8341
>seq111888
Length=3300
Score = 105 bits (116), Expect = 1e-17
Identities = 122/162 (75%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 24013 CCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGA 24072
|||||| | | ||| ||| | | |||||| |||||||||||| |||| | ||| |||
Sbjct 1680 CCTTTTGCCAATTTTACAAATTGACATTTTGGAAACCATCTTGCATGTTCAAACCATGGA 1621
Query 24073 TCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATCA 24132
||||| ||| ||| |||| |||| ||||||| ||||| ||| |||||||| | ||||
Sbjct 1620 TCATCTTCTTTTTGCCATGATCTTAATCCACCATTACAATGAAAACATTTAACATGATCA 1561
Query 24133 -CTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTTTC 24173
| | || | |||| | |||||||||| ||| ||| ||||
Sbjct 1560 TCAATATCTTG-ATAATAAAATCCAGCTTGTGCAAGTATTTC 1520
>seq34035
Length=19351
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||| ||| | | ||| ||||| ||||| || ||||| || |||||||| ||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||| | ||| || | |||||| ||||| ||||| || | ||| ||||| ||||||
Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||||||||||||
Sbjct 10463 ATACCTTCTTTATCTTG 10447
>seq116239
Length=11340
Score = 87.8 bits (96), Expect = 3e-12
Identities = 93/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
|||||||| | || ||||| ||| || || || ||||| || | || || | ||| ||
Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGA-ATGTTGTAATCCGACAATGTCCTACCATCCTC 4628
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||| ||||||||||||||||| | ||| ||||| || ||||| ||||| || |||||
Sbjct 4629 CAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTG 4688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742287554900480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |