Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq28819 181 2e-40 seq111888 105 1e-17 seq34035 98.7 1e-15 seq116239 87.8 3e-12 >seq28819 Length=13211 Score = 181 bits (200), Expect = 2e-40 Identities = 236/324 (73%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 10305 GAAAATGCTTTTGAACCTATTAGACAGA-CATCAAAATCTGCAGGAATGGATTTAAAAAG 10363 |||||||| |||| || | || | || || |||| | || ||| | ||||||||||| Sbjct 8019 GAAAATGCATTTGCCCC-AGTAAAGGGATCAGTAAAAGCAGCTGGATTTGATTTAAAAAG 8077 Query 10364 TGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTAT 10423 |||||| ||||||| |||| |||| | | ||| ||||||| |||||||||||| || Sbjct 8078 TGCATACGATTATAATGTTCCAGCTAAAGGGAAAGAATTAATTAAAACTGATTTACAAAT 8137 Query 10424 AGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAA 10483 | | || |||| | ||||| | | |||| || | |||| | ||| |||| || Sbjct 8138 TCATGTACCAGAAGGTTCTTATGGACGTATAGCACCACGTTCTGGACTTGCTGTAAAAAA 8197 Query 10484 ATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAAT 10543 || |||||| ||||||| || ||| | || || |||||| | |||||| | || || | Sbjct 8198 TTTCATTGATGTTGGAGCCGGTGTAGTGGATGAGGATTATCGTGGAAATTTAGGTGTTGT 8257 Query 10544 ATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATT 10603 |||||||||||||||| | | |||||| | |||| | || ||| |||| | ||||| Sbjct 8258 ATTATTTAATCATTCTGAAAATGATTTTCAAGTAAAACGTGGTGATCGAATTGCACAATT 8317 Query 10604 AATATGTGAAAAAATTTTATATCC 10627 || || |||| |||||| ||||| Sbjct 8318 GATTTGCGAAAGAATTTTTTATCC 8341 >seq111888 Length=3300 Score = 105 bits (116), Expect = 1e-17 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 24013 CCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGA 24072 |||||| | | ||| ||| | | |||||| |||||||||||| |||| | ||| ||| Sbjct 1680 CCTTTTGCCAATTTTACAAATTGACATTTTGGAAACCATCTTGCATGTTCAAACCATGGA 1621 Query 24073 TCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATCA 24132 ||||| ||| ||| |||| |||| ||||||| ||||| ||| |||||||| | |||| Sbjct 1620 TCATCTTCTTTTTGCCATGATCTTAATCCACCATTACAATGAAAACATTTAACATGATCA 1561 Query 24133 -CTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTTTC 24173 | | || | |||| | |||||||||| ||| ||| |||| Sbjct 1560 TCAATATCTTG-ATAATAAAATCCAGCTTGTGCAAGTATTTC 1520 >seq34035 Length=19351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||| | | ||| ||||| ||||| || ||||| || |||||||| || Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||| | ||| || | |||||| ||||| ||||| || | ||| ||||| |||||| Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 10463 ATACCTTCTTTATCTTG 10447 >seq116239 Length=11340 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||| | || ||||| ||| || || || ||||| || | || || | ||| || Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGA-ATGTTGTAATCCGACAATGTCCTACCATCCTC 4628 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||||||||||||||| | ||| ||||| || ||||| ||||| || ||||| Sbjct 4629 CAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTG 4688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742287554900480