Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq50502 183 3e-41 >seq50502 Length=11567 Score = 183 bits (202), Expect = 3e-41 Identities = 201/265 (76%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 16213 TAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272 || ||| || || ||||||| ||| |||||||||||||| | |||||| || | || Sbjct 4754 TACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAAT 4813 Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 ||| || ||||||||||| | ||| ||||||| |||||||||||| | |||||||||||| Sbjct 4814 TAATTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGC 4873 Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 ||||| ||| |||||| || |||||||| || ||||| |||| | || ||||| Sbjct 4874 TGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACC 4933 Query 16393 GTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA 16452 | | | | ||||||| | |||||| | |||||||| ||||||| ||||||||| Sbjct 4934 GAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACA 4993 Query 16453 -GTTCATGTTCTCTATTGCATTAAA 16476 | | ||||| || || ||||| || Sbjct 4994 CGGTAATGTT-TCAATAGCATTGAA 5017 Score = 131 bits (144), Expect = 2e-25 Identities = 188/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| || || |||| | || |||||||||||||||| ||| || ||||| || ||| Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || |||||||| || | ||||| | ||||||||||| ||| | ||| | | Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| || || || ||||| ||||||||||| || | | ||| |||||||| Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298 Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744 ||| | | | |||| ||||| || | ||||||||||||||| || ||||| Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358 Query 16745 ACAGTCCAAAAAGAAGCAACAGCCT 16769 || |||||||| || || |||||| Sbjct 5359 ACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | ||| ||||| ||| ||| |||||| | ||| ||||| Sbjct 4152 TTTAAAAATCTGCATCTAATGTAAAGACATTGTCTGTTTGATTTGATGTTACTCCCATTT 4211 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||||| |||| |||| |||||||||| || |||||||| || || | |||||| | Sbjct 4212 TTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGT 4271 Query 16005 CCATAAAATCAAAAGGATTTTTTGAA 16030 |||||||| ||||||||||| |||| Sbjct 4272 CCATAAAACTAAAAGGATTTTCTGAA 4297 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||||||| | | ||| | ||| || |||||||| ||||| || |||||| | ||| Sbjct 4410 TCCCAATTCACATAGTAAACGATCGGCAACAAATTCAATATATTGAGACATTAATTTACA 4469 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| ||||| || || || | |||||||||||||| | | ||| || || || Sbjct 4470 ATTCATTCCAATTAAATTGACTGGTAAAGCTTCTGTTAAAAATTCCTGTTCAATTTTTAC 4529 Query 16168 CGC 16170 || Sbjct 4530 TGC 4532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461741374068400