Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 183 3e-41
>seq50502
Length=11567
Score = 183 bits (202), Expect = 3e-41
Identities = 201/265 (76%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 16213 TAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272
|| ||| || || ||||||| ||| |||||||||||||| | |||||| || | ||
Sbjct 4754 TACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAAT 4813
Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332
||| || ||||||||||| | ||| ||||||| |||||||||||| | ||||||||||||
Sbjct 4814 TAATTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGC 4873
Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392
||||| ||| |||||| || |||||||| || ||||| |||| | || |||||
Sbjct 4874 TGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACC 4933
Query 16393 GTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA 16452
| | | | ||||||| | |||||| | |||||||| ||||||| |||||||||
Sbjct 4934 GAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACA 4993
Query 16453 -GTTCATGTTCTCTATTGCATTAAA 16476
| | ||||| || || ||||| ||
Sbjct 4994 CGGTAATGTT-TCAATAGCATTGAA 5017
Score = 131 bits (144), Expect = 2e-25
Identities = 188/265 (71%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564
||||| || || |||| | || |||||||||||||||| ||| || ||||| || |||
Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178
Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624
|| |||||||| || | ||||| | ||||||||||| ||| | ||| | |
Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238
Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684
||||| || || || ||||| ||||||||||| || | | ||| ||||||||
Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298
Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744
||| | | | |||| ||||| || | ||||||||||||||| || |||||
Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358
Query 16745 ACAGTCCAAAAAGAAGCAACAGCCT 16769
|| |||||||| || || ||||||
Sbjct 5359 ACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 123 bits (136), Expect = 2e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||||| | ||| ||||| ||| ||| |||||| | ||| |||||
Sbjct 4152 TTTAAAAATCTGCATCTAATGTAAAGACATTGTCTGTTTGATTTGATGTTACTCCCATTT 4211
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||||| |||| |||| |||||||||| || |||||||| || || | |||||| |
Sbjct 4212 TTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGT 4271
Query 16005 CCATAAAATCAAAAGGATTTTTTGAA 16030
|||||||| ||||||||||| ||||
Sbjct 4272 CCATAAAACTAAAAGGATTTTCTGAA 4297
Score = 82.4 bits (90), Expect = 7e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||||||| | | ||| | ||| || |||||||| ||||| || |||||| | |||
Sbjct 4410 TCCCAATTCACATAGTAAACGATCGGCAACAAATTCAATATATTGAGACATTAATTTACA 4469
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
|||||||| ||||| || || || | |||||||||||||| | | ||| || || ||
Sbjct 4470 ATTCATTCCAATTAAATTGACTGGTAAAGCTTCTGTTAAAAATTCCTGTTCAATTTTTAC 4529
Query 16168 CGC 16170
||
Sbjct 4530 TGC 4532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461741374068400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |