Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 259 4e-64
>seq21713
Length=22343
Score = 259 bits (286), Expect = 4e-64
Identities = 459/665 (69%), Gaps = 6/665 (1%)
Strand=Plus/Minus
Query 19970 AAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATA 20029
||| || |||||||| ||| |||||| |||| | |||||| ||| ||| ||
Sbjct 18914 AAAGAAATGATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTA 18855
Query 20030 ACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTG 20089
| | | || || || |||||||| || ||||| || |||||| | |||| |
Sbjct 18854 ATCTACGCGATAGCTTCCCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAG 18795
Query 20090 AAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAG 20149
|||| ||| | ||||||||| || ||| || ||| ||| |||||||
Sbjct 18794 AAGAATTACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAATA 18735
Query 20150 TTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAAT--GGATTTGACAA 20207
| | |||||| | | || | | | |||| ||| | | ||| |||||||| |
Sbjct 18734 TCCACATTTGGGATGGAAATAGCACCAGAGAATTCTTAGATA--AATCAGGATTTGAGGA 18677
Query 20208 CCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGA 20267
|| ||| || |||||||| ||||| ||||| ||||||||||| || || || || ||
Sbjct 18676 TCGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGA 18617
Query 20268 ATATGTTGACATGA-ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326
|||| ||||| ||| ||||| |||||| ||| | ||||||||| | | || |
Sbjct 18616 ATATAAA-ACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCA 18558
Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386
| | |||||| || || ||||| || ||| |||||||| | ||| ||||| | |
Sbjct 18557 TCGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAA 18498
Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446
|| | ||| |||||| | ||||| || ||| || ||||||||||| ||||
Sbjct 18497 TCGACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTATTCAATTTTACGTGGCTA 18438
Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506
|| ||||| || ||||| |||||||| |||| || |||||||| || || || ||||
Sbjct 18437 ATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTT 18378
Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566
| ||||| ||||||||||| |||| || || ||||| || || | ||| |||||||
Sbjct 18377 TTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAATTTAAAGC 18318
Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTT 20626
| || || || || |||||| |||| || || ||| |||| | |||||||| || ||
Sbjct 18317 CTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCGC 18258
Query 20627 TAAAA 20631
|||||
Sbjct 18257 TAAAA 18253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398535517358830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |