Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq21713 259 4e-64 >seq21713 Length=22343 Score = 259 bits (286), Expect = 4e-64 Identities = 459/665 (69%), Gaps = 6/665 (1%) Strand=Plus/Minus Query 19970 AAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATA 20029 ||| || |||||||| ||| |||||| |||| | |||||| ||| ||| || Sbjct 18914 AAAGAAATGATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTA 18855 Query 20030 ACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTG 20089 | | | || || || |||||||| || ||||| || |||||| | |||| | Sbjct 18854 ATCTACGCGATAGCTTCCCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAG 18795 Query 20090 AAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAG 20149 |||| ||| | ||||||||| || ||| || ||| ||| ||||||| Sbjct 18794 AAGAATTACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAATA 18735 Query 20150 TTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAAT--GGATTTGACAA 20207 | | |||||| | | || | | | |||| ||| | | ||| |||||||| | Sbjct 18734 TCCACATTTGGGATGGAAATAGCACCAGAGAATTCTTAGATA--AATCAGGATTTGAGGA 18677 Query 20208 CCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGA 20267 || ||| || |||||||| ||||| ||||| ||||||||||| || || || || || Sbjct 18676 TCGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGA 18617 Query 20268 ATATGTTGACATGA-ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326 |||| ||||| ||| ||||| |||||| ||| | ||||||||| | | || | Sbjct 18616 ATATAAA-ACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCA 18558 Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386 | | |||||| || || ||||| || ||| |||||||| | ||| ||||| | | Sbjct 18557 TCGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAA 18498 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446 || | ||| |||||| | ||||| || ||| || ||||||||||| |||| Sbjct 18497 TCGACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTATTCAATTTTACGTGGCTA 18438 Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506 || ||||| || ||||| |||||||| |||| || |||||||| || || || |||| Sbjct 18437 ATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTT 18378 Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566 | ||||| ||||||||||| |||| || || ||||| || || | ||| ||||||| Sbjct 18377 TTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAATTTAAAGC 18318 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTT 20626 | || || || || |||||| |||| || || ||| |||| | |||||||| || || Sbjct 18317 CTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCGC 18258 Query 20627 TAAAA 20631 ||||| Sbjct 18257 TAAAA 18253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398535517358830