Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 178 1e-39
seq3775 149 6e-31
seq28819 111 2e-19
>seq50502
Length=11567
Score = 178 bits (196), Expect = 1e-39
Identities = 196/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 14185 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 14244
|| ||| || || |||||||| ||||||||||||||||| || ||||| | ||| |
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 14245 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304
||| |||||||||||||| || ||||| | |||||||||||||||||||||||| || ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364
|| ||| |||||| ||||| ||||| |||||||| || || | || ||| || ||
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 14365 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14424
|| ||| | | |||||| | |||||| || | ||||||||||| | |
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 14425 CATTGTTTCAATAGCATTAAA 14445
| ||||||||||||||| ||
Sbjct 4997 TAATGTTTCAATAGCATTGAA 5017
Score = 129 bits (142), Expect = 6e-25
Identities = 179/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
|| || || ||||| | | ||| |||||||| || || | ||||| || || || |||
Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178
Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593
|| ||||||||||| | ||||| | |||||| ||| ||||| ||| | | |
Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238
Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653
|||||||| || ||||||||| |||||||||||||| || | | | |||||| |
Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298
Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14713
| ||| || | | | ||||| ||| | || | ||| || || | ||| ||||| |||
Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358
Query 14714 ACTGTCCAAAA 14724
|||||||||||
Sbjct 5359 ACTGTCCAAAA 5369
Score = 109 bits (120), Expect = 5e-19
Identities = 109/139 (78%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914
|||||||| ||||||| | ||| ||||| || | |||| || || | || ||||||||
Sbjct 4154 TAAAAATCTGCATCTAATGTAAAGACATTGTC-TGTTTGATTTGATGTTACTCCCATTTT 4212
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
|||||| |||| |||| | |||||||| ||||| |||||||| || || || ||| ||
Sbjct 4213 TTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGTC 4272
Query 13975 CATAAAATCAAATGGATTT 13993
||||||| ||| ||||||
Sbjct 4273 CATAAAACTAAAAGGATTT 4291
>seq3775
Length=22988
Score = 149 bits (164), Expect = 6e-31
Identities = 340/501 (68%), Gaps = 12/501 (2%)
Strand=Plus/Minus
Query 121473 TATTaaaaaaaa-aTTAGAAGGGTTGATATTAAAAGGAATAAATATCGATTATGTACCTG 121531
|||||||| | ||||||||| || || | ||| || || | | | ||| ||| |
Sbjct 6733 TATTAAAAGCAGGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAG 6674
Query 121532 GAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATCCATGGCAGATT 121591
||||||||||||||||||| || ||||| ||||| | ||| ||| |||||||||
Sbjct 6673 GAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATA 6614
Query 121592 CTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTGCGCCAT 121651
|||| || || || || |||||| ||| || |||| |||| || ||||| | |
Sbjct 6613 CTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAA 6554
Query 121652 CAATATTTTTAATGGGGTGCTATGATAATGAAAGTAATAATTGGAAAACGGTAACTAAA- 121710
||||| |||||||| || |||||| | ||| |||| |||||||| ||||| |||
Sbjct 6553 GTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAG 6494
Query 121711 TGC--TCTGGCCACGACGATGACACATTaaaaaaagtacaaaaagaaatagagtttttaa 121768
| | || || || ||| | || | || ||| | ||| ||| || | |||||
Sbjct 6493 TTCATTCAGGTTTAGATGATAATGCAATGAATAAACTTCAATCTGAATTACAACCTTTAA 6434
Query 121769 aaattagtaaagatacaaaaaaaatcccaaaaTGG--TTAATAGTAGATAA-AATATATT 121825
| | | |||| || | | ||||||||| || || ||| | || ||| ||
Sbjct 6433 TGGTCCGAATAGATTCAGATTGTTTACCAAAATGGATTTCAT-GTAAAAAACAATCAAT- 6376
Query 121826 ATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTGTGGGAAATATCGGGATCTA 121885
||| |||||| ||| |||||| || | | || ||||||||| | ||| ||
Sbjct 6375 -TCCGGATTTTTTAGCAAAAGATCCAGTAACAATGCCTGTTTGGGAAATAACTGGAGCTG 6317
Query 121886 GTTTTACAAAATC-GATACATCACACAGCAGATGGGATTTCGATAAGATTTCCTAGATTT 121944
||| ||||| | || || || |||||| |||| ||||| ||||||||||| | |
Sbjct 6316 AATTTTCAAAAGCTGAAGCA-CATACAGCAAATGGAATTTCAATAAGATTTCCACGCATA 6258
Query 121945 aaaaaaaTTAGATATGATAAA 121965
| || |||| | ||||||||
Sbjct 6257 ACAAGAATTCGCGATGATAAA 6237
>seq28819
Length=13211
Score = 111 bits (122), Expect = 2e-19
Identities = 208/302 (69%), Gaps = 8/302 (3%)
Strand=Plus/Minus
Query 11656 CTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCACTCGATCGCCTC 11715
||||| || || |||||| | | |||| |||| | ||| || | |||||| || |
Sbjct 8355 CTTCTACAAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCAC 8296
Query 11716 TTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTTACCCCTAT 11775
||| | | ||| ||||| | || ||||| |||| ||| || | || || | ||
Sbjct 8295 GTTTTACTTGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGAT 8236
Query 11776 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11835
|||| ||||| | || || |||| | ||| ||| || | || | ||| ||||| |
Sbjct 8235 AATCCTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAAC 8176
Query 11836 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA--TCAGTTTTAAC 11893
||| ||||| ||||||||| | || ||| || || || || || ||||||||||
Sbjct 8175 GTGGTGCTATACGTCCATAAGAACCTTCTGG--TACATGAATTTGTAAATCAGTTTTAAT 8118
Query 11894 TAAAATTCTTT--CTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATATCCT 11951
| |||||||| |||| | | ||| ||||||| || ||||| | ||||||| ||||
Sbjct 8117 T--AATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCA 8060
Query 11952 GC 11953
||
Sbjct 8059 GC 8058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481541927819920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |