Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq50502 178 1e-39 seq3775 149 6e-31 seq28819 111 2e-19 >seq50502 Length=11567 Score = 178 bits (196), Expect = 1e-39 Identities = 196/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 14185 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 14244 || ||| || || |||||||| ||||||||||||||||| || ||||| | ||| | Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 14245 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304 ||| |||||||||||||| || ||||| | |||||||||||||||||||||||| || || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 || ||| |||||| ||||| ||||| |||||||| || || | || ||| || || Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 14365 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14424 || ||| | | |||||| | |||||| || | ||||||||||| | | Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 14425 CATTGTTTCAATAGCATTAAA 14445 | ||||||||||||||| || Sbjct 4997 TAATGTTTCAATAGCATTGAA 5017 Score = 129 bits (142), Expect = 6e-25 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || || ||||| | | ||| |||||||| || || | ||||| || || || ||| Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || ||||||||||| | ||||| | |||||| ||| ||||| ||| | | | Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238 Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653 |||||||| || ||||||||| |||||||||||||| || | | | |||||| | Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298 Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14713 | ||| || | | | ||||| ||| | || | ||| || || | ||| ||||| ||| Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358 Query 14714 ACTGTCCAAAA 14724 ||||||||||| Sbjct 5359 ACTGTCCAAAA 5369 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914 |||||||| ||||||| | ||| ||||| || | |||| || || | || |||||||| Sbjct 4154 TAAAAATCTGCATCTAATGTAAAGACATTGTC-TGTTTGATTTGATGTTACTCCCATTTT 4212 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| |||| |||| | |||||||| ||||| |||||||| || || || ||| || Sbjct 4213 TTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGTC 4272 Query 13975 CATAAAATCAAATGGATTT 13993 ||||||| ||| |||||| Sbjct 4273 CATAAAACTAAAAGGATTT 4291 >seq3775 Length=22988 Score = 149 bits (164), Expect = 6e-31 Identities = 340/501 (68%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 121473 TATTaaaaaaaa-aTTAGAAGGGTTGATATTAAAAGGAATAAATATCGATTATGTACCTG 121531 |||||||| | ||||||||| || || | ||| || || | | | ||| ||| | Sbjct 6733 TATTAAAAGCAGGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAG 6674 Query 121532 GAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATCCATGGCAGATT 121591 ||||||||||||||||||| || ||||| ||||| | ||| ||| ||||||||| Sbjct 6673 GAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATA 6614 Query 121592 CTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTGCGCCAT 121651 |||| || || || || |||||| ||| || |||| |||| || ||||| | | Sbjct 6613 CTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAA 6554 Query 121652 CAATATTTTTAATGGGGTGCTATGATAATGAAAGTAATAATTGGAAAACGGTAACTAAA- 121710 ||||| |||||||| || |||||| | ||| |||| |||||||| ||||| ||| Sbjct 6553 GTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAG 6494 Query 121711 TGC--TCTGGCCACGACGATGACACATTaaaaaaagtacaaaaagaaatagagtttttaa 121768 | | || || || ||| | || | || ||| | ||| ||| || | ||||| Sbjct 6493 TTCATTCAGGTTTAGATGATAATGCAATGAATAAACTTCAATCTGAATTACAACCTTTAA 6434 Query 121769 aaattagtaaagatacaaaaaaaatcccaaaaTGG--TTAATAGTAGATAA-AATATATT 121825 | | | |||| || | | ||||||||| || || ||| | || ||| || Sbjct 6433 TGGTCCGAATAGATTCAGATTGTTTACCAAAATGGATTTCAT-GTAAAAAACAATCAAT- 6376 Query 121826 ATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTGTGGGAAATATCGGGATCTA 121885 ||| |||||| ||| |||||| || | | || ||||||||| | ||| || Sbjct 6375 -TCCGGATTTTTTAGCAAAAGATCCAGTAACAATGCCTGTTTGGGAAATAACTGGAGCTG 6317 Query 121886 GTTTTACAAAATC-GATACATCACACAGCAGATGGGATTTCGATAAGATTTCCTAGATTT 121944 ||| ||||| | || || || |||||| |||| ||||| ||||||||||| | | Sbjct 6316 AATTTTCAAAAGCTGAAGCA-CATACAGCAAATGGAATTTCAATAAGATTTCCACGCATA 6258 Query 121945 aaaaaaaTTAGATATGATAAA 121965 | || |||| | |||||||| Sbjct 6257 ACAAGAATTCGCGATGATAAA 6237 >seq28819 Length=13211 Score = 111 bits (122), Expect = 2e-19 Identities = 208/302 (69%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 11656 CTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCACTCGATCGCCTC 11715 ||||| || || |||||| | | |||| |||| | ||| || | |||||| || | Sbjct 8355 CTTCTACAAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCAC 8296 Query 11716 TTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTTACCCCTAT 11775 ||| | | ||| ||||| | || ||||| |||| ||| || | || || | || Sbjct 8295 GTTTTACTTGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGAT 8236 Query 11776 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11835 |||| ||||| | || || |||| | ||| ||| || | || | ||| ||||| | Sbjct 8235 AATCCTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAAC 8176 Query 11836 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA--TCAGTTTTAAC 11893 ||| ||||| ||||||||| | || ||| || || || || || |||||||||| Sbjct 8175 GTGGTGCTATACGTCCATAAGAACCTTCTGG--TACATGAATTTGTAAATCAGTTTTAAT 8118 Query 11894 TAAAATTCTTT--CTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATATCCT 11951 | |||||||| |||| | | ||| ||||||| || ||||| | ||||||| |||| Sbjct 8117 T--AATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCA 8060 Query 11952 GC 11953 || Sbjct 8059 GC 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481541927819920