Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq21713 161 1e-34 seq56598 107 3e-18 >seq21713 Length=22343 Score = 161 bits (178), Expect = 1e-34 Identities = 459/697 (66%), Gaps = 59/697 (8%) Strand=Plus/Minus Query 104170 GATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTAAGA 104229 ||| |||||||| ||||||| | | ||||||| |||| | | ||||||| || | Sbjct 18906 GATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATCTACGC 18847 Query 104230 -ACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAACT 104288 | | ||| || ||| |||| |||||| ||||||||| | ||||| ||||||| | Sbjct 18846 GATAGCTTC-CCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAGAAGAATT 18788 Query 104289 CTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAAAT 104348 | ||||||||| | || || ||||||| | | || | ||||| | | || Sbjct 18787 ACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAATATCCACAT 18728 Query 104349 TTGGAATAAAAAT-GCA-----GAATCGTTTTATACACAACAAAATCTTTTTaaaaaaaa 104402 |||| || |||| ||| |||| | ||| | | | || || | | | || Sbjct 18727 TTGGGATGGAAATAGCACCAGAGAAT--TCTTAGATAAATCAGGATTTGAGGATCGAGAA 18670 Query 104403 T-----GATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATATT 104457 ||||| || ||| | ||||||||||| ||||| || | || | | | |||| Sbjct 18669 GTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAATATAAA 18610 Query 104458 GGGTGCGATAATAAATATGGTGGT------ATAGATCAACTCAAAAATATTATTACAACA 104511 || | | ||| || | ||| || |||||| | || | | || | || Sbjct 18609 ACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCATCG-AGCA 18551 Query 104512 ATTCAAAATGAA-CCTTGGGATAGAAGAATGATATTATTA--GCTTGGAACCCAAAGGAT 104568 | | || | || || |||||| |||| |||||| | |||||||| |||| || Sbjct 18550 AATTAACACCAATCCAAATGATAGACGAAT--TATTATGACCGCTTGGAATCCAATCGAC 18493 Query 104569 AATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAA 104628 | | ||||||||||||| |||||||| |||||| | || ||||| Sbjct 18492 ATTCCTAAAATGGCACTACCTCCTTGCCATTGTCT--------------TA--TTCAATT 18449 Query 104629 ATAAATGG-TAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTT 104687 || ||| ||| ||||||| || ||||| || | ||||||||| ||||||||||| | Sbjct 18448 TTACGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCT 18389 Query 104688 GGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGTCTC 104747 ||||| |||||||| |||||||||||||| || | || | || |||||||| | Sbjct 18388 TGGAGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCA-----C 18334 Query 104748 ATCAACCAATACAGAATTAATTGTTCCTGGAGATTTTGTTCACACATTAAGTAATGTTCA 104807 ||| ||| | |||| |||||||||||||| ||||| ||| | ||| ||| Sbjct 18333 ATC-------ACAAATTTAA---AGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCA 18284 Query 104808 TATTTATAAAAATCATATTAAAGCTCTTACAGAACAA 104844 | ||||| |||||||||| | | || | ||| ||| Sbjct 18283 TGTTTATTTAAATCATATTGAGCCGCTAAAAGAGCAA 18247 >seq56598 Length=28085 Score = 107 bits (118), Expect = 3e-18 Identities = 135/184 (73%), Gaps = 5/184 (3%) Strand=Plus/Plus Query 73908 ATTGTTCATAGATATCTTCAAAATGGAGATATACTAGTGCTAAATAGACAACCTACTTTA 73967 ||||||||| | || | | |||||||||||| || | ||||| | || || |||||| Sbjct 11280 ATTGTTCATCGTCATTTACTTAATGGAGATATATTACTTTTAAATCGTCAGCCAACTTTA 11339 Query 73968 CATAAAGCATCAATGATGGCTCTTCGAGTTAAAATT----ATGGATGTAAAAACCTTTAA 74023 |||||| || || ||||||| | || |||||| |||| || |||||| ||| Sbjct 11340 CATAAACCAAGTATAATGGCTCATAAAGCAAAAATTTTACATGG-TGAAAAAACATTTCG 11398 Query 74024 ATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGATGGAGATGAAATGAATGC 74083 ||| || | || |||| |||| ||||| ||||||||||| |||||||||||||| Sbjct 11399 ATTACATTATTCAAATTGTAAATCATACAATGCTGATTTTGATGGGGATGAAATGAATGC 11458 Query 74084 TCAT 74087 ||| Sbjct 11459 ACAT 11462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 678681710242080