Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003038.1
Length=212482
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 161 1e-34
seq56598 107 3e-18
>seq21713
Length=22343
Score = 161 bits (178), Expect = 1e-34
Identities = 459/697 (66%), Gaps = 59/697 (8%)
Strand=Plus/Minus
Query 104170 GATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTAAGA 104229
||| |||||||| ||||||| | | ||||||| |||| | | ||||||| || |
Sbjct 18906 GATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATCTACGC 18847
Query 104230 -ACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAACT 104288
| | ||| || ||| |||| |||||| ||||||||| | ||||| ||||||| |
Sbjct 18846 GATAGCTTC-CCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAGAAGAATT 18788
Query 104289 CTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAAAT 104348
| ||||||||| | || || ||||||| | | || | ||||| | | ||
Sbjct 18787 ACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAATATCCACAT 18728
Query 104349 TTGGAATAAAAAT-GCA-----GAATCGTTTTATACACAACAAAATCTTTTTaaaaaaaa 104402
|||| || |||| ||| |||| | ||| | | | || || | | | ||
Sbjct 18727 TTGGGATGGAAATAGCACCAGAGAAT--TCTTAGATAAATCAGGATTTGAGGATCGAGAA 18670
Query 104403 T-----GATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATATT 104457
||||| || ||| | ||||||||||| ||||| || | || | | | ||||
Sbjct 18669 GTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAATATAAA 18610
Query 104458 GGGTGCGATAATAAATATGGTGGT------ATAGATCAACTCAAAAATATTATTACAACA 104511
|| | | ||| || | ||| || |||||| | || | | || | ||
Sbjct 18609 ACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCATCG-AGCA 18551
Query 104512 ATTCAAAATGAA-CCTTGGGATAGAAGAATGATATTATTA--GCTTGGAACCCAAAGGAT 104568
| | || | || || |||||| |||| |||||| | |||||||| |||| ||
Sbjct 18550 AATTAACACCAATCCAAATGATAGACGAAT--TATTATGACCGCTTGGAATCCAATCGAC 18493
Query 104569 AATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAA 104628
| | ||||||||||||| |||||||| |||||| | || |||||
Sbjct 18492 ATTCCTAAAATGGCACTACCTCCTTGCCATTGTCT--------------TA--TTCAATT 18449
Query 104629 ATAAATGG-TAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTT 104687
|| ||| ||| ||||||| || ||||| || | ||||||||| ||||||||||| |
Sbjct 18448 TTACGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCT 18389
Query 104688 GGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGTCTC 104747
||||| |||||||| |||||||||||||| || | || | || |||||||| |
Sbjct 18388 TGGAGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCA-----C 18334
Query 104748 ATCAACCAATACAGAATTAATTGTTCCTGGAGATTTTGTTCACACATTAAGTAATGTTCA 104807
||| ||| | |||| |||||||||||||| ||||| ||| | ||| |||
Sbjct 18333 ATC-------ACAAATTTAA---AGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCA 18284
Query 104808 TATTTATAAAAATCATATTAAAGCTCTTACAGAACAA 104844
| ||||| |||||||||| | | || | ||| |||
Sbjct 18283 TGTTTATTTAAATCATATTGAGCCGCTAAAAGAGCAA 18247
>seq56598
Length=28085
Score = 107 bits (118), Expect = 3e-18
Identities = 135/184 (73%), Gaps = 5/184 (3%)
Strand=Plus/Plus
Query 73908 ATTGTTCATAGATATCTTCAAAATGGAGATATACTAGTGCTAAATAGACAACCTACTTTA 73967
||||||||| | || | | |||||||||||| || | ||||| | || || ||||||
Sbjct 11280 ATTGTTCATCGTCATTTACTTAATGGAGATATATTACTTTTAAATCGTCAGCCAACTTTA 11339
Query 73968 CATAAAGCATCAATGATGGCTCTTCGAGTTAAAATT----ATGGATGTAAAAACCTTTAA 74023
|||||| || || ||||||| | || |||||| |||| || |||||| |||
Sbjct 11340 CATAAACCAAGTATAATGGCTCATAAAGCAAAAATTTTACATGG-TGAAAAAACATTTCG 11398
Query 74024 ATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGATGGAGATGAAATGAATGC 74083
||| || | || |||| |||| ||||| ||||||||||| ||||||||||||||
Sbjct 11399 ATTACATTATTCAAATTGTAAATCATACAATGCTGATTTTGATGGGGATGAAATGAATGC 11458
Query 74084 TCAT 74087
|||
Sbjct 11459 ACAT 11462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 678681710242080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |