Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 210 2e-49
seq50502 127 2e-24
seq116239 116 3e-21
seq8255 84.2 2e-11
>seq69808
Length=9325
Score = 210 bits (232), Expect = 2e-49
Identities = 1220/1947 (63%), Gaps = 35/1947 (2%)
Strand=Plus/Minus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
|| || || ||||| ||||| || | ||| || ||||| || || | ||||||||| ||
Sbjct 8279 TTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCA 8220
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224
|| || | ||| | |||||| | |||||||| || || || | | |||||| | ||
Sbjct 8219 GTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGT 8160
Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283
|| | |||| | | || || || ||||||||||| || || || || ||||| || |
Sbjct 8159 TCAGCTACATGAATA--TTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAG 8102
Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
|||| | || ||| | || |||||||| || || || || | | | ||
Sbjct 8101 CCATTTGCATTTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTG 8042
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| ||||| || || || | || || ||| || || |||||| |
Sbjct 8041 ATTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCA 7982
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| ||| | ||| ||| | | | || |||||||| | | | | || || ||
Sbjct 7981 TATCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAA 7922
Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
||| || || || || || || || || || || || ||||| | || || || ||||
Sbjct 7921 CAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATT 7862
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
| || || || | || || || || || || || ||||| || || | | | || |
Sbjct 7861 CGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAAT 7802
Query 22584 TTCTCAAGCCGTGCT-TTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGG 22640
||| | || || | || || |||| || || || ||| ||| | ||| ||||| |
Sbjct 7801 TTCGGATACCATGTTGTTTAATTTTTTCT-TTAAGTTCATT--CCAATTCCATAGATCAG 7745
Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700
|| || ||| ||||||||| ||||| | | || | || | || || |
Sbjct 7744 TTGGTGTTTTATT---CCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCAT 7688
Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760
| || ||||| || | |||||||| | || | |||||| || ||||| || || || |
Sbjct 7687 CATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCAT 7628
Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820
|||| || || || || |||| | || |||| || | | ||||| || ||
Sbjct 7627 AATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGT 7568
Query 22821 TACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880
|||||| | | || || || || | || || ||||| ||||| || ||||| |
Sbjct 7567 AACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGAC 7508
Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940
| ||| || |||||| || || |||||||| |||| ||| || || | ||||
Sbjct 7507 GAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCA 7448
Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT 23000
| ||||| || |||||||| || | | ||| || || |
Sbjct 7447 AATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTATCTG 7388
Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060
| ||||||| | || | || || || || | ||| || || || | || ||| |
Sbjct 7387 CTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCTGGTG 7328
Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120
| || || |||||||| ||||| ||||| ||||| || || ||||| | || |
Sbjct 7327 CTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGTT 7268
Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180
| || ||||||||||| |||| ||| || || | ||| || || || || || || || |
Sbjct 7267 GATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACTT 7208
Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC-----GCACGTACCT 23235
| || || || || || ||| | | | || | || | |||||
Sbjct 7207 GAGATTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAGCACGA---- 7152
Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCG--TCAAATTCGGCACCGTA-ACAGTCGGC 23292
||||| | || || ||| || || | ||||||| |||| | ||| |
Sbjct 7151 -CCTTCATTTTCATA--TTTAATATAAAGTTGATCAAATTTTTCACCCCATACATTAAAT 7095
Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352
| | || | || | |||||||| | ||| | ||| |||||| ||| |
Sbjct 7094 AAACCAGGACATTTATGT-GGACACATTAATGACCAATTATCATCAGCTTCAACACGTTT 7036
Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412
|||||| | ||| || ||||| | || || || | || | || || || ||| |
Sbjct 7035 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGT 6976
Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472
|| || || ||||| |||| ||||| || || | || |||||||| || || | ||
Sbjct 6975 TCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATA 6916
Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532
|| ||||| || || |||| ||||| || || ||||| || || | || || ||
Sbjct 6915 AATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATT 6856
Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592
| || | || ||| || || | ||| || || || | ||| || | |
Sbjct 6855 AAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGT 6796
Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652
|||||||| || | | || || | | || || || || | ||| ||||||||
Sbjct 6795 ACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCACCAGCATTTTTTGATATCAT 6736
Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712
|||||||||| | | | | || || || || || || | | | ||
Sbjct 6735 TGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAA 6676
Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772
||||| || || | ||| | | || || || | || | ||| || || ||
Sbjct 6675 AAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATG 6616
Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832
||||| || | | || | ||||| || || || || | |||||||| | || ||
Sbjct 6615 AGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACC 6556
Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892
||||||||| | || || ||||| | ||| | ||| ||||| || | | || ||
Sbjct 6555 GTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTACCATT 6496
Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952
|||||| |||| |||||| | || | |||||||| |||||||| | ||| ||| ||
Sbjct 6495 AATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCAAAATC 6436
Query 23953 ACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGAT---GTTGTA 24009
|||||| | | || |||||||| ||||| | ||||| | | ||||| |||||
Sbjct 6435 ACGATCATAAATAATTGCCGAATTTAAACGATCAGCATT---ATCCATGATAGCTTTGTA 6379
Query 24010 ATGAAAATTCGATATCATCGGCGTTTT 24036
|||| | | || ||||| || ||||
Sbjct 6378 ATGATAGTCAGAAATCATTGGACTTTT 6352
>seq50502
Length=11567
Score = 127 bits (140), Expect = 2e-24
Identities = 177/247 (72%), Gaps = 12/247 (5%)
Strand=Plus/Minus
Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648
|||| |||||||| |||||||| || |||||||| || | || || ||| || | |
Sbjct 5383 AGGCTGAAGCATCATTTTGGACAGTTGAAGAAGTTGATTTATCAAAAGATATGGCTCACT 5324
Query 57649 GGGATTCCCTCAAAGAATCTGA--GAGAA----ATTTTATTAAACACGTGTTGGCGTTTT 57702
|||| ||| | || ||||| |||||||| ||| || || || ||||
Sbjct 5323 GGGAA------AAATTAACTAGTGGAGAACGTCATTTTATTTCACATGTTTTAGCATTTT 5270
Query 57703 TCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGC 57762
| || || || ||||||||||| || || ||| | || ||| ||||| |||||||| |
Sbjct 5269 TTGCAGCCTCTGATGGTATTGTAAATGAAAATCTTGTTGAACGATTTGGTCAAGAAGTAC 5210
Query 57763 AAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAG 57822
|| | || || || | || ||||| || |||||| | || |||||||| || |||||||
Sbjct 5209 AAATTACTGAAGCACGTTGTTTTTATGGCTTTCAAATTGCAATTGAAAATGTTCATTCAG 5150
Query 57823 AAATGTA 57829
|||||||
Sbjct 5149 AAATGTA 5143
Score = 91.5 bits (100), Expect = 1e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568
|||||| || ||| ||| ||||| ||||||||||| || ||||| ||| ||||||||||
Sbjct 6582 TGAACCGCTATTGAGAGATAATCCACGTAGATTTGTTATATTTCCAATTCAATATCCAGA 6523
Query 57569 CATTTGGAACATGTACAAAAAGG 57591
|||||||| ||||||||| |||
Sbjct 6522 TATTTGGAAAATGTACAAAGAGG 6500
>seq116239
Length=11340
Score = 116 bits (128), Expect = 3e-21
Identities = 162/223 (73%), Gaps = 3/223 (1%)
Strand=Plus/Minus
Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243
|| ||||| ||||| ||||| ||||| ||| | || || ||||| || || | || |||
Sbjct 4786 GACTCAAA-ATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTT 4728
Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCC 31302
|| ||||| |||| | |||| || ||| || ||| | | ||||||||||| | ||
Sbjct 4727 GAGCCGTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAG-ACAAGGAAGGCATTCC 4669
Query 31303 GCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG 31362
|| || || || ||| | || || ||||| || || ||||| || || ||| ||
Sbjct 4668 ACCAGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTC 4609
Query 31363 CGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||| ||||||||||| ||||| || |||||| |||| |||
Sbjct 4608 GGATTACAACATTCAAAAGGAATCCACACTTCATTTGGTTCTT 4566
>seq8255
Length=4873
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274
|||| || || || ||||| | || || ||||| | |||| | ||| | ||||
Sbjct 389 TGACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAAC 448
Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334
| ||| ||||| ||| | || || || ||||| |||| | |||| ||||||||||
Sbjct 449 CTAAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCA 508
Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394
|||| ||| |||| | || | |||||| ||||||||||| ||||| || ||||
Sbjct 509 AACAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTTC 568
Query 31395 ATCTGGTACTT 31405
| |||| |||
Sbjct 569 ACTTGGTCCTT 579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445023675168480
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