Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq69808 210 2e-49 seq50502 127 2e-24 seq116239 116 3e-21 seq8255 84.2 2e-11 >seq69808 Length=9325 Score = 210 bits (232), Expect = 2e-49 Identities = 1220/1947 (63%), Gaps = 35/1947 (2%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||| ||||| || | ||| || ||||| || || | ||||||||| || Sbjct 8279 TTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCA 8220 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || | ||| | |||||| | |||||||| || || || | | |||||| | || Sbjct 8219 GTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGT 8160 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || | |||| | | || || || ||||||||||| || || || || ||||| || | Sbjct 8159 TCAGCTACATGAATA--TTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAG 8102 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | || ||| | || |||||||| || || || || | | | || Sbjct 8101 CCATTTGCATTTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTG 8042 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | ||||| || || || | || || ||| || || |||||| | Sbjct 8041 ATTTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCA 7982 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | ||| | ||| ||| | | | || |||||||| | | | | || || || Sbjct 7981 TATCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAA 7922 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||| || || || || || || || || || || || ||||| | || || || |||| Sbjct 7921 CAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATT 7862 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | || || || | || || || || || || || ||||| || || | | | || | Sbjct 7861 CGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAAT 7802 Query 22584 TTCTCAAGCCGTGCT-TTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGG 22640 ||| | || || | || || |||| || || || ||| ||| | ||| ||||| | Sbjct 7801 TTCGGATACCATGTTGTTTAATTTTTTCT-TTAAGTTCATT--CCAATTCCATAGATCAG 7745 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700 || || ||| ||||||||| ||||| | | || | || | || || | Sbjct 7744 TTGGTGTTTTATT---CCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCAT 7688 Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760 | || ||||| || | |||||||| | || | |||||| || ||||| || || || | Sbjct 7687 CATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCAT 7628 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820 |||| || || || || |||| | || |||| || | | ||||| || || Sbjct 7627 AATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGT 7568 Query 22821 TACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 |||||| | | || || || || | || || ||||| ||||| || ||||| | Sbjct 7567 AACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGAC 7508 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 | ||| || |||||| || || |||||||| |||| ||| || || | |||| Sbjct 7507 GAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCA 7448 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT 23000 | ||||| || |||||||| || | | ||| || || | Sbjct 7447 AATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTATCTG 7388 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 | ||||||| | || | || || || || | ||| || || || | || ||| | Sbjct 7387 CTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCTGGTG 7328 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 | || || |||||||| ||||| ||||| ||||| || || ||||| | || | Sbjct 7327 CTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGTT 7268 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 | || ||||||||||| |||| ||| || || | ||| || || || || || || || | Sbjct 7267 GATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACTT 7208 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC-----GCACGTACCT 23235 | || || || || || ||| | | | || | || | ||||| Sbjct 7207 GAGATTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTTTTATTAGCACGA---- 7152 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCG--TCAAATTCGGCACCGTA-ACAGTCGGC 23292 ||||| | || || ||| || || | ||||||| |||| | ||| | Sbjct 7151 -CCTTCATTTTCATA--TTTAATATAAAGTTGATCAAATTTTTCACCCCATACATTAAAT 7095 Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 | | || | || | |||||||| | ||| | ||| |||||| ||| | Sbjct 7094 AAACCAGGACATTTATGT-GGACACATTAATGACCAATTATCATCAGCTTCAACACGTTT 7036 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| | ||| || ||||| | || || || | || | || || || ||| | Sbjct 7035 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGT 6976 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 || || || ||||| |||| ||||| || || | || |||||||| || || | || Sbjct 6975 TCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATA 6916 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 || ||||| || || |||| ||||| || || ||||| || || | || || || Sbjct 6915 AATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATT 6856 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | || | || ||| || || | ||| || || || | ||| || | | Sbjct 6855 AAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGT 6796 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 |||||||| || | | || || | | || || || || | ||| |||||||| Sbjct 6795 ACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCACCAGCATTTTTTGATATCAT 6736 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 |||||||||| | | | | || || || || || || | | | || Sbjct 6735 TGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAA 6676 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||||| || || | ||| | | || || || | || | ||| || || || Sbjct 6675 AAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATG 6616 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 ||||| || | | || | ||||| || || || || | |||||||| | || || Sbjct 6615 AGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACC 6556 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 ||||||||| | || || ||||| | ||| | ||| ||||| || | | || || Sbjct 6555 GTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTACCATT 6496 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 |||||| |||| |||||| | || | |||||||| |||||||| | ||| ||| || Sbjct 6495 AATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCAAAATC 6436 Query 23953 ACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGAT---GTTGTA 24009 |||||| | | || |||||||| ||||| | ||||| | | ||||| ||||| Sbjct 6435 ACGATCATAAATAATTGCCGAATTTAAACGATCAGCATT---ATCCATGATAGCTTTGTA 6379 Query 24010 ATGAAAATTCGATATCATCGGCGTTTT 24036 |||| | | || ||||| || |||| Sbjct 6378 ATGATAGTCAGAAATCATTGGACTTTT 6352 >seq50502 Length=11567 Score = 127 bits (140), Expect = 2e-24 Identities = 177/247 (72%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| |||||||| |||||||| || |||||||| || | || || ||| || | | Sbjct 5383 AGGCTGAAGCATCATTTTGGACAGTTGAAGAAGTTGATTTATCAAAAGATATGGCTCACT 5324 Query 57649 GGGATTCCCTCAAAGAATCTGA--GAGAA----ATTTTATTAAACACGTGTTGGCGTTTT 57702 |||| ||| | || ||||| |||||||| ||| || || || |||| Sbjct 5323 GGGAA------AAATTAACTAGTGGAGAACGTCATTTTATTTCACATGTTTTAGCATTTT 5270 Query 57703 TCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGC 57762 | || || || ||||||||||| || || ||| | || ||| ||||| |||||||| | Sbjct 5269 TTGCAGCCTCTGATGGTATTGTAAATGAAAATCTTGTTGAACGATTTGGTCAAGAAGTAC 5210 Query 57763 AAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAG 57822 || | || || || | || ||||| || |||||| | || |||||||| || ||||||| Sbjct 5209 AAATTACTGAAGCACGTTGTTTTTATGGCTTTCAAATTGCAATTGAAAATGTTCATTCAG 5150 Query 57823 AAATGTA 57829 ||||||| Sbjct 5149 AAATGTA 5143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 |||||| || ||| ||| ||||| ||||||||||| || ||||| ||| |||||||||| Sbjct 6582 TGAACCGCTATTGAGAGATAATCCACGTAGATTTGTTATATTTCCAATTCAATATCCAGA 6523 Query 57569 CATTTGGAACATGTACAAAAAGG 57591 |||||||| ||||||||| ||| Sbjct 6522 TATTTGGAAAATGTACAAAGAGG 6500 >seq116239 Length=11340 Score = 116 bits (128), Expect = 3e-21 Identities = 162/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 || ||||| ||||| ||||| ||||| ||| | || || ||||| || || | || ||| Sbjct 4786 GACTCAAA-ATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTT 4728 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCC 31302 || ||||| |||| | |||| || ||| || ||| | | ||||||||||| | || Sbjct 4727 GAGCCGTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAG-ACAAGGAAGGCATTCC 4669 Query 31303 GCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG 31362 || || || || ||| | || || ||||| || || ||||| || || ||| || Sbjct 4668 ACCAGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTC 4609 Query 31363 CGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||||||||| ||||| || |||||| |||| ||| Sbjct 4608 GGATTACAACATTCAAAAGGAATCCACACTTCATTTGGTTCTT 4566 >seq8255 Length=4873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| || || || ||||| | || || ||||| | |||| | ||| | |||| Sbjct 389 TGACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAAC 448 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 | ||| ||||| ||| | || || || ||||| |||| | |||| |||||||||| Sbjct 449 CTAAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCA 508 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 |||| ||| |||| | || | |||||| ||||||||||| ||||| || |||| Sbjct 509 AACAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTTC 568 Query 31395 ATCTGGTACTT 31405 | |||| ||| Sbjct 569 ACTTGGTCCTT 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445023675168480