Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq21713 152 1e-31 seq50502 100 6e-16 >seq21713 Length=22343 Score = 152 bits (168), Expect = 1e-31 Identities = 463/709 (65%), Gaps = 35/709 (5%) Strand=Plus/Minus Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGA 35212 ||| |||| ||| ||||| ||||| | |||||| | |||||||| || ||| || Sbjct 18906 GATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATCTACGC 18847 Query 35213 GACGACACTATTCCAGTTCTCACTACCAAGAAAA----TTTTCTGGAGAGGAGTTGTGGA 35268 || | |||| || | || ||| |||| |||| ||| | | ||||| || Sbjct 18846 GATAGC----TTCCCATTAT---TAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAGA 18794 Query 35269 AGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGAT 35328 |||| | ||||| || | |||| ||||| || || | |||||| || || Sbjct 18793 AGAATTACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTA--CAAGAAAAAAAT 18736 Query 35329 A--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 | ||||| ||| | | ||| | | | ||||| || || | ||| || | ||| Sbjct 18735 ATCCACATTTGGGATGGAAATAGCACCAGAGAATTCTTAGATAAATCAGGATTTGAGGAT 18676 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 ||| || || |||||||| || ||||| || || |||||| | || || || || ||| Sbjct 18675 CGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAA 18616 Query 35447 TATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG--GCCAAT-AT- 35502 ||| | || ||| |||| |||| |||| ||||||||||| || | | || Sbjct 18615 TATAAAACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCATC 18556 Query 35503 -----ACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGG 35557 | | || ||| |||||| |||||||| | || |||||||| || ||| Sbjct 18555 GAGCAAATTAACACC---------AATCCAAATGATAGACGAATTATTATGACCGCTTGG 18505 Query 35558 AATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT-CAATTTTA 35616 ||||| || || ||| ||||| || ||||| ||||| || || | |||||||| Sbjct 18504 AATCCAATCGACATTCCTAAAATGGCACTACCTCCTTGCCAT-TGTCTTATTCAATTTTA 18446 Query 35617 TGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGG 35676 ||||||||||||||||| || || ||||||||||| || | |||| | || | || Sbjct 18445 CGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGG 18386 Query 35677 CGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGG 35736 ||||| || ||||| ||| || || | || ||| | |||| || || Sbjct 18385 AGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAA 18326 Query 35737 TCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACAT 35796 | |||| || ||||| ||| | | ||| | || || || || ||||| | || || Sbjct 18325 TTTAAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATAT 18266 Query 35797 TGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGACCATTCCCTAAG 35845 |||| | |||| |||| ||| || || || |||| || || ||| Sbjct 18265 TGAGCCGCTAAAAGAGCAATTGAATCGTGTGCCACGACCTTTTCCAAAG 18217 >seq50502 Length=11567 Score = 100 bits (110), Expect = 6e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | ||| |||| |||| |||||||| ||||||||||| ||||||||||| | Sbjct 4938 ATTTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGGAATTTTCTTTAGTGGAAGTT 4879 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | ||| | || || ||| | || || | || || |||||||| | || | || |||| Sbjct 4878 TTGCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCCTGGTTTAACATTTTCAAATG 4819 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063 | || ||||| | || ||||| |||||| | || |||||||| Sbjct 4818 AATTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGCATG 4776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987893959375770