Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 152 1e-31
seq50502 100 6e-16
>seq21713
Length=22343
Score = 152 bits (168), Expect = 1e-31
Identities = 463/709 (65%), Gaps = 35/709 (5%)
Strand=Plus/Minus
Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGA 35212
||| |||| ||| ||||| ||||| | |||||| | |||||||| || ||| ||
Sbjct 18906 GATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATCTACGC 18847
Query 35213 GACGACACTATTCCAGTTCTCACTACCAAGAAAA----TTTTCTGGAGAGGAGTTGTGGA 35268
|| | |||| || | || ||| |||| |||| ||| | | ||||| ||
Sbjct 18846 GATAGC----TTCCCATTAT---TAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAGA 18794
Query 35269 AGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGAT 35328
|||| | ||||| || | |||| ||||| || || | |||||| || ||
Sbjct 18793 AGAATTACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTA--CAAGAAAAAAAT 18736
Query 35329 A--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386
| ||||| ||| | | ||| | | | ||||| || || | ||| || | |||
Sbjct 18735 ATCCACATTTGGGATGGAAATAGCACCAGAGAATTCTTAGATAAATCAGGATTTGAGGAT 18676
Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446
||| || || |||||||| || ||||| || || |||||| | || || || || |||
Sbjct 18675 CGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAA 18616
Query 35447 TATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG--GCCAAT-AT- 35502
||| | || ||| |||| |||| |||| ||||||||||| || | | ||
Sbjct 18615 TATAAAACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCATC 18556
Query 35503 -----ACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGG 35557
| | || ||| |||||| |||||||| | || |||||||| || |||
Sbjct 18555 GAGCAAATTAACACC---------AATCCAAATGATAGACGAATTATTATGACCGCTTGG 18505
Query 35558 AATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT-CAATTTTA 35616
||||| || || ||| ||||| || ||||| ||||| || || | ||||||||
Sbjct 18504 AATCCAATCGACATTCCTAAAATGGCACTACCTCCTTGCCAT-TGTCTTATTCAATTTTA 18446
Query 35617 TGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGG 35676
||||||||||||||||| || || ||||||||||| || | |||| | || | ||
Sbjct 18445 CGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGG 18386
Query 35677 CGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGG 35736
||||| || ||||| ||| || || | || ||| | |||| || ||
Sbjct 18385 AGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAA 18326
Query 35737 TCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACAT 35796
| |||| || ||||| ||| | | ||| | || || || || ||||| | || ||
Sbjct 18325 TTTAAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATAT 18266
Query 35797 TGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGACCATTCCCTAAG 35845
|||| | |||| |||| ||| || || || |||| || || |||
Sbjct 18265 TGAGCCGCTAAAAGAGCAATTGAATCGTGTGCCACGACCTTTTCCAAAG 18217
>seq50502
Length=11567
Score = 100 bits (110), Expect = 6e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960
|||| | ||| |||| |||| |||||||| ||||||||||| ||||||||||| |
Sbjct 4938 ATTTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGGAATTTTCTTTAGTGGAAGTT 4879
Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020
| ||| | || || ||| | || || | || || |||||||| | || | || ||||
Sbjct 4878 TTGCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCCTGGTTTAACATTTTCAAATG 4819
Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063
| || ||||| | || ||||| |||||| | || ||||||||
Sbjct 4818 AATTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGCATG 4776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 987893959375770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |