Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq69808 699 0.0 seq50502 188 9e-43 seq3775 105 8e-18 >seq69808 Length=9325 Score = 699 bits (774), Expect = 0.0 Identities = 1279/1852 (69%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| |||||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| |||||| |||| | || || |||| ||| ||||| | |||||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGCAATTT 62244 ||||| ||||| || || | ||||||||||||| || | || |||| || ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 62245 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 62300 |||||| |||||||| || || | || | || ||| | || | |||| | || Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013 Query 62301 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 || |||| || | | || || |||| || || ||||||| |||||| | || ||| Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953 Query 62361 AAAACTCT-AAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGT 62419 ||| || | || ||| | |||||||| ||||| ||||| ||||| | ||| Sbjct 7952 AAATCTTTTAATAAGAAATGA-TTAACTACAACAAATTCACCAGATAATACACGACGATG 7894 Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 || ||||| ||||| || || | || || ||||| || |||||||| || ||||| Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62539 ||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| || Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774 Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 ||| || | | ||||||||| ||||| | ||| | |||||| || Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714 Query 62600 AATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 ||||| | || | ||||| ||||||| ||||||| || | ||||||| Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719 || ||||| |||||||||||||| |||||||| |||||||| || | | ||||| | Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594 Query 62720 TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTG 62779 |||||||| || ||| |||| ||| | | |||||| || || ||||| ||||| Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534 Query 62780 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62839 || |||||||| || |||| ||| | ||| || ||| |||||||| | |||||| Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474 Query 62840 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62896 |||||||||||| ||||||||||| | ||||| | |||||| |||| || || || Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417 Query 62897 CAGTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAATGCAACAGATGC 62953 ||||| ||||||| || || || | |||||||| || || |||| || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 62954 CAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 63013 | |||||| || |||| |||| | | | ||||| | || || || || ||||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 63014 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63073 |||||| || || || || | |||||||||||||| ||| ||||||||||| ||||| Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 63074 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63133 | || |||||||||||||||||| |||||||| || || || ||| | || Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 63134 AGCCTTTATT-ATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGA 63192 || || ||| | ||| | | | | ||| |||| ||| | |||| | | | || | Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118 Query 63193 ACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACT 63252 | | || ||||| ||||| || | |||||||| || |||||||| || ||||| | Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058 Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312 | ||| | | || ||||||||||| | ||| |||||||| | || ||||| || Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 | || | | |||||| || |||| ||||| ||||| | || | || | | ||||| Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | | |||||| ||||| || || || || | | || || ||||| || || || |||| Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | |||||||| |||||| | || | |||||||| | | ||| |||||||||| Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818 Query 63493 CATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT---AT-TACTAATTGATAGACCT 63548 |||| || || | || | || | | ||| || || ||| ||| || || Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || || |||| || || | ||||||| ||| | | | | | || ||||| Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702 Query 63609 ATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 || |||||| | || |||||| || |||||| || | ||| ||||| ||| | Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 ||| |||||| || || || || || ||||| | ||| || | ||||| || || Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583 Query 63728 CTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 |||||| | | || ||| | || | || || || ||||| |||||||||||||| | Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 | || ||||||||| ||||||| || ||||| ||||| || ||| |||| || |||| Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464 Query 63847 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||||||||||||| || || ||| || || || |||||||| ||||||| Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412 >seq50502 Length=11567 Score = 188 bits (208), Expect = 9e-43 Identities = 205/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||| || || || |||| || |||||||| ||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||| || || ||||| | || || ||||| || |||||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | ||||||||| || || |||||| |||||||||||| || || |||||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 ||||| ||| | |||| ||| | ||| | | |||||||| |||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||||| ||||||||||||||||| || |||| Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 141 bits (156), Expect = 1e-28 Identities = 195/269 (72%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617 |||| |||||| || ||||| |||||||| ||||| || || || || || || | | Sbjct 4752 TGTACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAA 4811 Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 |||||||| || ||||| || | || ||||||| || || ||||| | ||||||||| Sbjct 4812 ATTAATTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATA 4871 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 | || || ||| |||||| |||||||| || |||||||| ||||||| ||| || Sbjct 4872 GCTGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCA 4931 Query 33738 CCATAACCGGC-GCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 || || || | | | | || | |||| | |||||||||||| || ||||| ||| Sbjct 4932 CCGAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACA 4991 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || || | ||||| || ||||| || || Sbjct 4992 CACGGTAATGTTTCAATAGCATTGAAAAG 5020 >seq3775 Length=22988 Score = 105 bits (116), Expect = 8e-18 Identities = 322/488 (66%), Gaps = 11/488 (2%) Strand=Plus/Minus Query 155778 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATG 155837 |||||||||||| || | ||| ||||||| || ||| |||| ||||| ||| | || Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661 Query 155838 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 155897 ||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| || Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601 Query 155898 AGTACTAGGTGCCTACTATGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCT-TTC-TA 155955 || |||| || | ||||||| ||| ||| ||||| || | ||| | ||| || Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543 Query 155956 ATGGGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAA---TGTTCCGGT 156012 ||||| ||||| || | || | || |||||| || ||||| ||| ||| ||| Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAGTTCATTCAGGT 6483 Query 156013 CACGATGATAATACGTTAAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAA- 156071 ||||||||| | | | | ||| |||| || | |||| | || Sbjct 6482 TTAGATGATAATGCAATGAATAAACTTCAATCTGAATT-ACAACCTTTAATGGTCCGAAT 6424 Query 156072 GGATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGT 156131 ||| | | | ||| | ||| | | ||| ||| | ||||| |||||| | Sbjct 6423 AGATTCAGATTGTTTACCAAAATGGATTTCATGTAAAAAACAATCAATTCCGGATTTTTT 6364 Query 156132 AGTAGATGATCC-GAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTT 156190 || | | ||||| | |||||| | | | |||||||| | ||||| || ||| || Sbjct 6363 AGCAAAAGATCCAGTAACAATGCCTG-TTTGGGAAATAACTGGAGCTGAATTTTCAAAAG 6305 Query 156191 CCAAGTCACATACAGCGAATGGAATATCAATTAGATTTCCTAGATTTACTAGGATTAGAG 156250 | | |||||||||| |||||||| ||||| |||||||| | | || || ||| | | Sbjct 6304 CTGAAGCACATACAGCAAATGGAATTTCAATAAGATTTCCACGCATAACAAGAATTCGCG 6245 Query 156251 AAGATAAA 156258 | |||||| Sbjct 6244 ATGATAAA 6237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628768213660320