Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq31147 89.7 1e-13 >seq31147 Length=2015 Score = 89.7 bits (98), Expect = 1e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 754 GGGGCGAAGTGCGCATAACGCATCGTCATTTCGATAGTTGAATGACCGAGGATTTCTTTC 813 |||||||| || | ||| ||||| ||||||| ||| | ||| || |||||| || Sbjct 1416 GGGGCGAAATGGGAATACCGCATTGTCATTTTAATATCGGTATGGCCAAGGATTCTTTGT 1357 Query 814 AACACTAAAATATTCCCACCGTTCATCATAAAATGGCTGGCGAACGTATGGCGCAAAACG 873 || ||||||||||| ||||| ||||||||| || || || || ||||| ||||| Sbjct 1356 AATACTAAAATATTTCCACCTGACATCATAAAGTGAGATGCAAAAGTGTGGCGTAAAACA 1297 Query 874 TGGGTTAGTTGCCCTTTGGGTAACTCAAT 902 || | | ||| | || ||||||||||| Sbjct 1296 TGTGATGATTGGCGTTCAGGTAACTCAAT 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100544599037160