Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq69808 728 0.0 seq50502 190 2e-43 seq3775 120 3e-22 >seq69808 Length=9325 Score = 728 bits (806), Expect = 0.0 Identities = 1294/1869 (69%), Gaps = 44/1869 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| ||||| || || || | |||||||| | |||||||||||||||| Sbjct 8276 TCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCAGTT 8217 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || || ||||||| ||||||||||| || ||| | || | || | | Sbjct 8216 TTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGTTCA 8157 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | ||||||||| ||||| || || || || | || || |||||| Sbjct 8156 GCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCCATT 8097 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | | | |||| | || || |||||||| |||||||||| | | ||| | Sbjct 8096 TGCAT--TTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGATT 8039 Query 37028 CTGGTAAATC-TAAATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 ||||| || | ||| | || ||||||||| || | | |||||||| || || | Sbjct 8038 TTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCATAT 7979 Query 37085 CATTATTCCACATATTTCTACTTAT--TAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 ||| || ||| | || | | || | || ||| | |||| | |||| || || Sbjct 7978 CATCATCCCATAAAT--CAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAAC 7921 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || ||||||||||| | | ||| ||||| ||||| || |||| || || Sbjct 7920 AAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATTC 7861 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 ||||||| ||| ||||| | ||| ||||| || ||||||||||| |||| | ||| Sbjct 7860 GTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATT 7801 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 || | |||||| |||||| | | ||| ||||||||||||| ||||| ||| ||||| Sbjct 7800 TCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGG 7741 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || ||||||||||||||| || ||||||| || |||| || | | |||||| Sbjct 7740 TGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCATATGT 7681 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 ||||| | || || | || ||||| ||||||||||| |||| ||| ||||||| || Sbjct 7680 TTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAATAAAT 7621 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||| || |||||| ||||||| | | ||||||||| || || ||| || | || Sbjct 7620 TGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAACGCAT 7561 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 ||| ||||| ||||||| || || || || || ||||| || |||| ||| ||| Sbjct 7560 TAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGAAAATT 7501 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | |||| | ||||||||||| ||||| || |||||||| | |||| | Sbjct 7500 TGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAATTTCT 7441 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT------T 37676 | ||||| |||| | | | || || | || || | || || |||| | Sbjct 7440 TGTAACAATTTTTGTAACTTCTTT-AAGTTTTTTAAAATCA-TATTTT-TTATCTGCTGT 7384 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 |||||| || | || | ||| || ||| |||||| ||||| | ||||||| | | || Sbjct 7383 AACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCT--GGTGCT 7326 Query 37737 AAATTGT--ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGA 37794 ||| | | ||| |||||||| |||||||| || |||| || || | || |||| Sbjct 7325 GAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGTTGA 7266 Query 37795 TTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGA 37854 || |||| |||||| | ||||||||||| ||||| || || || ||| | |||| Sbjct 7265 TTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACTTGA 7206 Query 37855 GCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA-----Atttttt 37909 | || || |||| |||||| | ||||||| || | |||| | | Sbjct 7205 GATTCAATTATAGCAAACCATAATGAACGTGCTTTA---ATTGTTTTATTAGCACGACCT 7149 Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAAT 37968 || | |||| |||| ||||| || ||| | |||| ||| |||||||||| |||| Sbjct 7148 TCAT--TTTCATATTTAATATA-AAGTTGATCAAATTTTTCACCCCATACATTAAATAAA 7092 Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 || ||||||| ||||||||||| ||||| | ||||| ||| || |||| |||| Sbjct 7091 CCAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACGTTTCATA 7032 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 |||||||| || | ||| | |||| ||||||||| | | | || |||||| | || Sbjct 7031 AATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGTTCCA 6972 Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148 ||| ||| |||| ||| ||| || || ||||| || ||||||||||||| |||||| Sbjct 6971 GTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATAAATA 6912 Query 38149 GACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATAT 38208 | | ||| ||||||| ||||| ||| || |||| || ||||||| | |||||| | Sbjct 6911 GCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATTAAAG 6852 Query 38209 ATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCC 38268 | | |||||| ||||||| |||||| ||| | || ||| | || | || | ||||| Sbjct 6851 ACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGTACCT 6792 Query 38269 TTAGCTCGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 || | ||||| || ||| | | | ||| || ||||| |||| ||||||||| | Sbjct 6791 TTTGAACGTATGCAATGTACATTT----ATTCCAATACCACCAGCATTTTTTGATATCAT 6736 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 |||||||||| | | | |||||||||||| || ||||| |||| || || Sbjct 6735 TGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAA 6676 Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 |||||| || | |||||| | ||| | || ||||||||| || |||||||| Sbjct 6675 AAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATG 6616 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 | || | ||| || ||| |||||| ||||| || ||| |||| |||| | | || Sbjct 6615 AGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACC 6556 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT 38564 ||| ||||| | | || | ||||| |||||||||||||||||| |||||| ||| Sbjct 6555 GTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTACCATT 6496 Query 38565 CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATC 38624 ||| | | ||| ||| ||||||||||||| | ||||||||| |||| | |||| Sbjct 6495 AATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCAAAATC 6436 Query 38625 TCTATCGTA 38633 | ||| || Sbjct 6435 ACGATCATA 6427 >seq50502 Length=11567 Score = 190 bits (210), Expect = 2e-43 Identities = 197/258 (76%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| ||| || || ||||| | || |||||||||||||||| |||||| || || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 |||||||| ||||| ||||| ||||| || | | ||||| || | ||||| ||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | ||| |||||||||||||||||| | |||||||||||||| | |||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTAC 12129 ||| | ||| | |||||||||| ||||| | | | | ||||||||||||||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 12130 TTCTTCAACGGTCCAAAA 12147 ||||||||| |||||||| Sbjct 5352 TTCTTCAACTGTCCAAAA 5369 Score = 167 bits (184), Expect = 2e-36 Identities = 197/266 (74%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 |||| |||||| || ||||||||||| |||||||||||||| | ||||| || | Sbjct 4752 TGTACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAA 4811 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 |||| |||||| ||||||||||| || ||||| | |||||||||||||| |||||||||| Sbjct 4812 ATTAATTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATA 4871 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 || ||||| ||| |||||| ||||| || ||||| ||||| || | | |||||| Sbjct 4872 GCTGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCA 4931 Query 11786 CC---ATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 || || | || || | |||||| | |||||||| ||||| ||||| || Sbjct 4932 CCGAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACA 4991 Query 11843 CATTCCATTGTTTCTATAGCGTTAAA 11868 || | |||||| ||||| || || Sbjct 4992 CACGGTAATGTTTCAATAGCATTGAA 5017 >seq3775 Length=22988 Score = 120 bits (132), Expect = 3e-22 Identities = 145/196 (74%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 120267 ATATAAACCAGGAAATAAAGGTTGGTTGAAAATAAAGAAGGATTATATACTAAATGGATC 120326 |||| |||||||||| | ||||||||| ||||| ||||| |||||| | | | ||| Sbjct 6684 ATATCAACCAGGAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACA 6625 Query 120327 TATAGCGGATTCCGTTGATTTAGTTGTGTTAGGATCATACTATGGAAAAGGGTCAAGGGG 120386 || || ||| | | |||||| ||||| |||||| ||| ||||| | |||| || || Sbjct 6624 AATGGCAGATACTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGG 6565 Query 120387 CGGCATTCAATCAATATTCTTAATGGGATGTTACGATCCCAACGATTGTAAATGGAAAAC 120446 ||||| | |||||||||||||||||||| ||| | || || ||||||||| Sbjct 6564 TGGCATGTTAAGTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAAAAC 6505 Query 120447 GGTTACAAAATGTTCA 120462 || |||||| ||||| Sbjct 6504 AGTAACAAAA-GTTCA 6490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467744155691360