Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 728 0.0
seq50502 190 2e-43
seq3775 120 3e-22
>seq69808
Length=9325
Score = 728 bits (806), Expect = 0.0
Identities = 1294/1869 (69%), Gaps = 44/1869 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| || |||| ||||| || || || | |||||||| | ||||||||||||||||
Sbjct 8276 TCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCAGTT 8217
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|||| || || ||||||| ||||||||||| || ||| | || | || | |
Sbjct 8216 TTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGTTCA 8157
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
||| || || | | ||||||||| ||||| || || || || | || || ||||||
Sbjct 8156 GCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCCATT 8097
Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027
| | | |||| | || || |||||||| |||||||||| | | ||| |
Sbjct 8096 TGCAT--TTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGATT 8039
Query 37028 CTGGTAAATC-TAAATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084
||||| || | ||| | || ||||||||| || | | |||||||| || || |
Sbjct 8038 TTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCATAT 7979
Query 37085 CATTATTCCACATATTTCTACTTAT--TAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142
||| || ||| | || | | || | || ||| | |||| | |||| || ||
Sbjct 7978 CATCATCCCATAAAT--CAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAAC 7921
Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202
||| || ||||||||||| | | ||| ||||| ||||| || |||| || ||
Sbjct 7920 AAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATTC 7861
Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262
||||||| ||| ||||| | ||| ||||| || ||||||||||| |||| | |||
Sbjct 7860 GTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATT 7801
Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322
|| | |||||| |||||| | | ||| ||||||||||||| ||||| ||| |||||
Sbjct 7800 TCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGG 7741
Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382
| || ||||||||||||||| || ||||||| || |||| || | | ||||||
Sbjct 7740 TGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCATATGT 7681
Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442
||||| | || || | || ||||| ||||||||||| |||| ||| ||||||| ||
Sbjct 7680 TTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAATAAAT 7621
Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502
|||||| || |||||| ||||||| | | ||||||||| || || ||| || | ||
Sbjct 7620 TGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTAACGCAT 7561
Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562
||| ||||| ||||||| || || || || || ||||| || |||| ||| |||
Sbjct 7560 TAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACGAAAATT 7501
Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622
||| | | |||| | ||||||||||| ||||| || |||||||| | |||| |
Sbjct 7500 TGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAAATTTCT 7441
Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT------T 37676
| ||||| |||| | | | || || | || || | || || |||| |
Sbjct 7440 TGTAACAATTTTTGTAACTTCTTT-AAGTTTTTTAAAATCA-TATTTT-TTATCTGCTGT 7384
Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736
|||||| || | || | ||| || ||| |||||| ||||| | ||||||| | | ||
Sbjct 7383 AACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATCT--GGTGCT 7326
Query 37737 AAATTGT--ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGA 37794
||| | | ||| |||||||| |||||||| || |||| || || | || ||||
Sbjct 7325 GAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCAATGTTTTGTTGA 7266
Query 37795 TTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGA 37854
|| |||| |||||| | ||||||||||| ||||| || || || ||| | ||||
Sbjct 7265 TTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAGTTTCAACTTGA 7206
Query 37855 GCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA-----Atttttt 37909
| || || |||| |||||| | ||||||| || | |||| | |
Sbjct 7205 GATTCAATTATAGCAAACCATAATGAACGTGCTTTA---ATTGTTTTATTAGCACGACCT 7149
Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAAT 37968
|| | |||| |||| ||||| || ||| | |||| ||| |||||||||| ||||
Sbjct 7148 TCAT--TTTCATATTTAATATA-AAGTTGATCAAATTTTTCACCCCATACATTAAATAAA 7092
Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028
|| ||||||| ||||||||||| ||||| | ||||| ||| || |||| ||||
Sbjct 7091 CCAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCAACACGTTTCATA 7032
Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088
|||||||| || | ||| | |||| ||||||||| | | | || |||||| | ||
Sbjct 7031 AATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGTTCTTCTGTTCCA 6972
Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148
||| ||| |||| ||| ||| || || ||||| || ||||||||||||| ||||||
Sbjct 6971 GTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATAAATA 6912
Query 38149 GACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATAT 38208
| | ||| ||||||| ||||| ||| || |||| || ||||||| | |||||| |
Sbjct 6911 GCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCAACATTATTAAAG 6852
Query 38209 ATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCC 38268
| | |||||| ||||||| |||||| ||| | || ||| | || | || | |||||
Sbjct 6851 ACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCAATTGATGTACCT 6792
Query 38269 TTAGCTCGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324
|| | ||||| || ||| | | | ||| || ||||| |||| ||||||||| |
Sbjct 6791 TTTGAACGTATGCAATGTACATTT----ATTCCAATACCACCAGCATTTTTTGATATCAT 6736
Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384
|||||||||| | | | |||||||||||| || ||||| |||| || ||
Sbjct 6735 TGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATCATCAACCATTGTTAATAA 6676
Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444
|||||| || | |||||| | ||| | || ||||||||| || ||||||||
Sbjct 6675 AAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAAATAATGTTGGTGATGCATG 6616
Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504
| || | ||| || ||| |||||| ||||| || ||| |||| |||| | | ||
Sbjct 6615 AGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAACAGCATCAATATTATCACC 6556
Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT 38564
||| ||||| | | || | ||||| |||||||||||||||||| |||||| |||
Sbjct 6555 GTGTATACCAACTGCAACACGCATTAACATATGTTGTGGTCTTTCAGCAATTTTACCATT 6496
Query 38565 CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATC 38624
||| | | ||| ||| ||||||||||||| | ||||||||| |||| | ||||
Sbjct 6495 AATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCAAAATAATTATACCCAAAATC 6436
Query 38625 TCTATCGTA 38633
| ||| ||
Sbjct 6435 ACGATCATA 6427
>seq50502
Length=11567
Score = 190 bits (210), Expect = 2e-43
Identities = 197/258 (76%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||| ||| ||| || || ||||| | || |||||||||||||||| |||||| || ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009
|||||||| ||||| ||||| ||||| || | | ||||| || | ||||| |||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069
| | ||| |||||||||||||||||| | |||||||||||||| | |||| ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTAC 12129
||| | ||| | |||||||||| ||||| | | | | ||||||||||||||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 12130 TTCTTCAACGGTCCAAAA 12147
||||||||| ||||||||
Sbjct 5352 TTCTTCAACTGTCCAAAA 5369
Score = 167 bits (184), Expect = 2e-36
Identities = 197/266 (74%), Gaps = 3/266 (1%)
Strand=Plus/Plus
Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665
|||| |||||| || ||||||||||| |||||||||||||| | ||||| || |
Sbjct 4752 TGTACTAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAA 4811
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|||| |||||| ||||||||||| || ||||| | |||||||||||||| ||||||||||
Sbjct 4812 ATTAATTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATA 4871
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785
|| ||||| ||| |||||| ||||| || ||||| ||||| || | | ||||||
Sbjct 4872 GCTGCAAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCA 4931
Query 11786 CC---ATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842
|| || | || || | |||||| | |||||||| ||||| ||||| ||
Sbjct 4932 CCGAAATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACA 4991
Query 11843 CATTCCATTGTTTCTATAGCGTTAAA 11868
|| | |||||| ||||| || ||
Sbjct 4992 CACGGTAATGTTTCAATAGCATTGAA 5017
>seq3775
Length=22988
Score = 120 bits (132), Expect = 3e-22
Identities = 145/196 (74%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 120267 ATATAAACCAGGAAATAAAGGTTGGTTGAAAATAAAGAAGGATTATATACTAAATGGATC 120326
|||| |||||||||| | ||||||||| ||||| ||||| |||||| | | | |||
Sbjct 6684 ATATCAACCAGGAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACA 6625
Query 120327 TATAGCGGATTCCGTTGATTTAGTTGTGTTAGGATCATACTATGGAAAAGGGTCAAGGGG 120386
|| || ||| | | |||||| ||||| |||||| ||| ||||| | |||| || ||
Sbjct 6624 AATGGCAGATACTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGG 6565
Query 120387 CGGCATTCAATCAATATTCTTAATGGGATGTTACGATCCCAACGATTGTAAATGGAAAAC 120446
||||| | |||||||||||||||||||| ||| | || || |||||||||
Sbjct 6564 TGGCATGTTAAGTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAAAAC 6505
Query 120447 GGTTACAAAATGTTCA 120462
|| |||||| |||||
Sbjct 6504 AGTAACAAAA-GTTCA 6490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467744155691360
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