Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq69808 688 0.0 seq50502 194 2e-44 seq3775 104 3e-17 seq41910 89.7 7e-13 >seq69808 Length=9325 Score = 688 bits (762), Expect = 0.0 Identities = 1276/1852 (69%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| |||||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| |||||| |||| | || || |||| ||| ||||| | |||||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTT 65037 ||||| ||||| || || | ||||||||||||| || | || |||| || ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 65038 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 65093 |||||| |||||||| || || | || | || ||| | || | |||| | || Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013 Query 65094 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 || |||| || ||| || || |||| || || ||||||| |||||| | || ||| Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953 Query 65154 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 65212 ||| || | || ||| | ||||||||| |||||| ||||| ||||| | ||| Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894 Query 65213 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 65272 || ||||| ||||| || || | || || ||||| || |||||||| || ||||| Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834 Query 65273 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 65332 ||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| || Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 65392 ||| || | ||||||||| ||||| | ||| ||| || Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714 Query 65393 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 ||||| | || | ||||| ||||||| || |||| || | ||||||| Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 ||| ||||| |||||||||||||| |||||||| ||||| || || | | ||||| | Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594 Query 65513 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 65572 |||||||| || ||| |||| ||| | | |||||| || || ||||| ||||| Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534 Query 65573 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 65632 || |||||||| || |||| ||| | ||| || ||| |||||||| | |||||| Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474 Query 65633 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 65689 |||||||||||| ||||||||||| | ||||| | |||||| |||| || || || Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417 Query 65690 CAGTTTGAGAAAATCAAATCGCTCAT---CTATTACAAACATGTTCAATGCAACAGATGC 65746 ||||| ||||||| || | || || | |||||||| || || |||| || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 65747 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 65806 | ||||||||| |||| |||| | | | ||||| | || || || || ||||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 65807 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 65866 |||||| || ||||| || | |||||||||||||| ||| ||||||||||| ||||| Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 65867 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 65926 | || |||||||||||||||||| |||||||| || || || ||| | || Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 65927 AGCCTTTATT-ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 65985 || || ||| | ||| | | | ||| |||| ||| |||| | | | || | Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118 Query 65986 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 66045 | | || ||||| ||||| || |||||||||| || |||||||| || ||||| | Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058 Query 66046 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAAT 66105 | ||| | | || ||||||||||| | ||| |||||||| | || |||||||| Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998 Query 66106 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 66165 | || | | |||||| || |||| ||||| ||||| | || | || | | ||||| Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938 Query 66166 CATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 66225 | |||||| ||||| || || || || | | || || ||||| || || || |||| Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878 Query 66226 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 66285 | | |||||||| |||||| | || | |||||||| | | |||||| ||| ||| Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818 Query 66286 CATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT---AT-TACTAATTGATAGACCT 66341 |||| || || | || | | || ||| ||| || || ||| ||| || || Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401 || || || || |||| || || | ||||||| ||| | | | | | || || || Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702 Query 66402 ATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || |||||| | || |||||| || |||||| || | ||| |||||| ||| | Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 ||| |||||| || || || || || ||||| | ||| || | ||||| || || Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583 Query 66521 CTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 |||||| | | || ||| | || | || || || ||||| |||||||||||||| | Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 | || ||||||||| | || || || ||||| ||||| || ||| |||| || |||| Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464 Query 66640 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||||||||||||| || || ||| || || || |||||||| |||| || Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412 >seq50502 Length=11567 Score = 194 bits (214), Expect = 2e-44 Identities = 206/272 (76%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | ||| || ||||| |||| || |||||||| ||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||||||| || || ||||| | || || ||||| ||||||||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 | | ||||||||| || || || ||| |||||||||||| || || |||||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 36657 ||||| ||| |||| ||| | ||| | | |||||||| |||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 36658 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 |||||| ||||||||||||||||| || |||| Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 150 bits (166), Expect = 2e-31 Identities = 193/264 (73%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 36139 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 36198 |||||| || ||||| |||||||| ||||| || || || || || || | |||||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 ||| || ||||| || | || ||||||| || || ||||| | ||||||||| | || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 ||| |||| ||||||||||||||| || || ||||| ||||||| ||| || || | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 36319 ACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | || | | | || ||||| | |||||||||||| || ||||| ||||| || Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 36376 CATTGTCTCTATAGCATTAAAGAG 36399 | ||| || |||||||| || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020 >seq3775 Length=22988 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 158969 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 159028 |||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | || Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661 Query 159029 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 159088 ||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| || Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601 Query 159089 AGTACTAGGTGCTTACTATGGTAAAGGATCAAAGGGTGGTATTATGGCAGTCTTTTTAAT 159148 || |||| || | ||||||| ||| ||| ||||| || | | || ||||| Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAAGTATATTCTTAAT 6541 Query 159149 GGGTTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 159200 ||| ||||| ||| | || | || |||||| || ||||| ||| ||||| Sbjct 6540 GGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTCA 6490 >seq41910 Length=65838 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 31227 CTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATATGTGTATT 31286 |||| |||||||||||||||||||||||||||| ||||| || | |||| |||| Sbjct 6030 CTTG-CCTGAGTTAATGATCTCCAATCCATATTTGCGCTACCAAGGTAAAAATGTTGTCC 5972 Query 31287 ATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322 |||| |||||| | |||||||||||| ||||| || Sbjct 5971 ATCAACTATCCACAGTTTTGTATGAAGTACTCCACC 5936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657076168934960