Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq21713 100 2e-16 >seq21713 Length=22343 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 ||||| || || || || |||||||||||||| ||||| || | | |||| |||| Sbjct 18278 TAAACATGAGCATCGCCTAAGGTGTGCACAAAATCTCCAGGCTTTAAATTTGTGATGTGA 18337 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || |||| || || || | || || || || || ||||| || || || || ||||| Sbjct 18338 GCTATCATGTAAGTGAGCAAAGCATAACTTGCTATATTAAAAGGCACTCCAAGACCCATA 18397 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACAC 21125 || || || || || |||| ||| || || | || || |||||||||||| ||| | Sbjct 18398 TCTGCTGATCTTTGATACAACTGACATGATAATTCTCCATTAGCCACGTAAAATTGA-AT 18456 Query 21126 AAAAC-GTGACAAGGAGGGAGAGCCAT 21151 || || || |||||||| || ||||| Sbjct 18457 AAGACAATGGCAAGGAGGTAGTGCCAT 18483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427081069065120