Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 116 4e-21
seq34035 104 2e-17
>seq116239
Length=11340
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||| ||| | ||| || |||| || || || ||||||||||| ||||| |
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || || || | || || |||||| | |||| |||||| ||||| || ||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| | |||| |||| | | ||| | |||||| | ||||| ||
Sbjct 4672 ATGCCTTCCTTGTC-TTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAAC 4730
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | || || || || || |||||||| || || |||||
Sbjct 4731 CTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778
>seq34035
Length=19351
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | || | ||||| || | || ||||||||||| |||||||||||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | || | || || || ||||||||||| | || | |||||| ||||| |||||
Sbjct 10523 AAGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| |||||||| || ||| || ||| | | ||| | ||| || | ||| || ||
Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| || | ||||| || || | ||||| || ||||| ||||||
Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATA 10356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495237470564800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |