Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq69808 720 0.0 seq50502 188 1e-42 seq3775 96.9 5e-15 >seq69808 Length=9325 Score = 720 bits (798), Expect = 0.0 Identities = 1284/1851 (69%), Gaps = 32/1851 (2%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| || ||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 ||||| |||||| |||| | || || |||| ||| ||||| | |||||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTT 78916 ||||| ||||| || || | ||||||||||||| || | || |||| || ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 78917 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 78972 |||||| |||||||| || || | || | || ||| | || | |||| | || Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013 Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 || |||| || ||| || || |||| || || || |||| |||||| | || ||| Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953 Query 79033 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 79091 ||| || | || ||| | ||||||||| |||||| ||||| ||||| | ||| Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894 Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 || ||||| ||||| || || | ||||| ||||| || |||||||| || ||||| Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATC 79211 ||| |||||||| ||||| | || ||| ||||| | ||| | | | | ||||| || Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774 Query 79212 TTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAG 79271 ||| || | ||||| ||| ||||||| || |||||| | ||||||||| || Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714 Query 79272 AATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAA 79331 ||||| | ||| | |||||| ||||||||||| | || | ||| ||||| Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654 Query 79332 TTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 79391 ||| ||||| ||||||||||| || |||||||| ||||| || || | | ||| | | Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594 Query 79392 TTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 79451 ||||||||| || ||| |||| ||| | | |||||| || || ||||| ||||| Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534 Query 79452 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 79511 || |||||||| || |||| ||| | ||| || ||| |||||||| | |||||| Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474 Query 79512 ATAATTAATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTT 79568 |||||||||||| ||||||||||| | ||| | | || ||| |||| || || || Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417 Query 79569 TAGTTTGAGAAAATCAAATCGTCCAT---CTATTACAAACATGTTCAACGCGACAGATGC 79625 ||||| ||||||| || | || || | |||||||| || || || | || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 79626 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT 79685 | ||||||||| |||| |||| | | | ||||| | ||||| || || || || Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745 |||||| |||||||| || | |||||||||||||| ||| ||||||||||| ||||| Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805 | || | |||||||||||||||| |||||||| || || || ||| | || Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865 || || ||| | || | ||| |||| |||| |||| | | | || || Sbjct 7176 TGCTTTAATTGTTTTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAA 7117 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925 | || ||||| |||| ||| |||||||||| | |||||||| || ||||| | Sbjct 7116 TTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATT 7057 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985 ||||| | | || ||||||||||| | ||| |||||||| | || ||||| ||| Sbjct 7056 ATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATC 6997 Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045 || | | ||| || || |||| ||||| ||||| | || | || | | |||||| Sbjct 6996 CCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATC 6937 Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105 | |||||| ||||| || || || || | | || |||||||| || || || ||||| Sbjct 6936 TGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATC 6877 Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165 | |||||||| |||||| | || | |||||||| | | |||||| ||| |||| Sbjct 6876 AACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACC 6817 Query 80166 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTA 80221 ||| || || | || | | || | | ||| || || ||| ||| || || | Sbjct 6816 ATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCAA 6761 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 80281 | || || || |||| || || | ||||||| ||| | | | | | || || || | Sbjct 6760 TACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAA 6701 Query 80282 TGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340 | |||||||| || |||||| || |||||| || | ||| |||||| ||| | Sbjct 6700 TTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGCT 6642 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 ||| |||||| || || || || || ||||| | ||| || | ||||| || || Sbjct 6641 GCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTT 6582 Query 80401 TCAATAGCTGATTCTATA-TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 |||||| | | || ||| | || | || || || || || |||||||||||||| || Sbjct 6581 TCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATG 6523 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 || ||||||||| | || || ||| ||||| ||||| || ||| |||| || ||||| Sbjct 6522 TTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTT 6463 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 |||||||||||| || || ||| || || || |||||||| |||| || Sbjct 6462 AAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412 >seq50502 Length=11567 Score = 188 bits (208), Expect = 1e-42 Identities = 205/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||| || || || |||| || |||||||| ||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || ||||| || || ||||| | || || ||||| || |||||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | | | ||||||||| || || || ||| |||||||||||| || || |||||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459 |||||| ||| |||| ||| | ||| | | |||||||| |||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 |||||| ||||||||||||||||| || |||| Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 132 bits (146), Expect = 7e-26 Identities = 190/264 (72%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 49941 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 50000 |||||| || ||||| |||||||| ||||| || || || || || || | ||||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 50001 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 50060 ||| || ||||| || | || ||||||| || || ||||| | ||||||||| | || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 50061 AAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA 50120 ||| ||| |||||| |||||||| || || ||||| |||| || ||| || || | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 50121 ACTGGC-GCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 | | || | | | | || | |||| | |||||||||||| || ||||| ||||| || Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 50178 CATCGTTTCTATGGCATTAAAGAG 50201 | ||||| || ||||| || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020 >seq3775 Length=22988 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 174217 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 174276 |||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | || Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661 Query 174277 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGT 174336 ||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| || Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601 Query 174337 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCT-TTC-TA 174394 || |||| || | ||||||| ||| ||| ||||| || | ||| | ||| || Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543 Query 174395 ATGGGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 174447 ||||| ||||| || | || | || |||||| || ||||| ||| |||| Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTC 6491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717072038482160