Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 720 0.0
seq50502 188 1e-42
seq3775 96.9 5e-15
>seq69808
Length=9325
Score = 720 bits (798), Expect = 0.0
Identities = 1284/1851 (69%), Gaps = 32/1851 (2%)
Strand=Plus/Minus
Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798
|| ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| || |||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858
||||| |||||| |||| | || || |||| ||| ||||| | ||||||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTT 78916
||||| ||||| || || | ||||||||||||| || | || |||| || |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 78917 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 78972
|||||| |||||||| || || | || | || ||| | || | |||| | ||
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013
Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032
|| |||| || ||| || || |||| || || || |||| |||||| | || |||
Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953
Query 79033 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 79091
||| || | || ||| | ||||||||| |||||| ||||| ||||| | |||
Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894
Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151
|| ||||| ||||| || || | ||||| ||||| || |||||||| || |||||
Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834
Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATC 79211
||| |||||||| ||||| | || ||| ||||| | ||| | | | | ||||| ||
Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774
Query 79212 TTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAG 79271
||| || | ||||| ||| ||||||| || |||||| | ||||||||| ||
Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714
Query 79272 AATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAA 79331
||||| | ||| | |||||| ||||||||||| | || | ||| |||||
Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654
Query 79332 TTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 79391
||| ||||| ||||||||||| || |||||||| ||||| || || | | ||| | |
Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594
Query 79392 TTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 79451
||||||||| || ||| |||| ||| | | |||||| || || ||||| |||||
Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534
Query 79452 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 79511
|| |||||||| || |||| ||| | ||| || ||| |||||||| | ||||||
Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474
Query 79512 ATAATTAATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTT 79568
|||||||||||| ||||||||||| | ||| | | || ||| |||| || || ||
Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417
Query 79569 TAGTTTGAGAAAATCAAATCGTCCAT---CTATTACAAACATGTTCAACGCGACAGATGC 79625
||||| ||||||| || | || || | |||||||| || || || | || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 79626 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT 79685
| ||||||||| |||| |||| | | | ||||| | ||||| || || || ||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297
Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745
|||||| |||||||| || | |||||||||||||| ||| ||||||||||| |||||
Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237
Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805
| || | |||||||||||||||| |||||||| || || || ||| | ||
Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177
Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865
|| || ||| | || | ||| |||| |||| |||| | | | || ||
Sbjct 7176 TGCTTTAATTGTTTTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAA 7117
Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925
| || ||||| |||| ||| |||||||||| | |||||||| || ||||| |
Sbjct 7116 TTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATT 7057
Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985
||||| | | || ||||||||||| | ||| |||||||| | || ||||| |||
Sbjct 7056 ATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATC 6997
Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045
|| | | ||| || || |||| ||||| ||||| | || | || | | ||||||
Sbjct 6996 CCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATC 6937
Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105
| |||||| ||||| || || || || | | || |||||||| || || || |||||
Sbjct 6936 TGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATC 6877
Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165
| |||||||| |||||| | || | |||||||| | | |||||| ||| ||||
Sbjct 6876 AACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACC 6817
Query 80166 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTA 80221
||| || || | || | | || | | ||| || || ||| ||| || || |
Sbjct 6816 ATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCAA 6761
Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 80281
| || || || |||| || || | ||||||| ||| | | | | | || || || |
Sbjct 6760 TACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAA 6701
Query 80282 TGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340
| |||||||| || |||||| || |||||| || | ||| |||||| ||| |
Sbjct 6700 TTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGCT 6642
Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400
||| |||||| || || || || || ||||| | ||| || | ||||| || ||
Sbjct 6641 GCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTT 6582
Query 80401 TCAATAGCTGATTCTATA-TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459
|||||| | | || ||| | || | || || || || || |||||||||||||| ||
Sbjct 6581 TCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATG 6523
Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519
|| ||||||||| | || || ||| ||||| ||||| || ||| |||| || |||||
Sbjct 6522 TTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTT 6463
Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570
|||||||||||| || || ||| || || || |||||||| |||| ||
Sbjct 6462 AAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412
>seq50502
Length=11567
Score = 188 bits (208), Expect = 1e-42
Identities = 205/272 (75%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||| | ||| || || || |||| || |||||||| ||||||| |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339
|| ||||| || || ||||| | || || ||||| || |||||| || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399
| | | ||||||||| || || || ||| |||||||||||| || || |||||| ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459
|||||| ||| |||| ||| | ||| | | |||||||| |||| ||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
|||||| ||||||||||||||||| || ||||
Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 132 bits (146), Expect = 7e-26
Identities = 190/264 (72%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 49941 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 50000
|||||| || ||||| |||||||| ||||| || || || || || || | |||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 50001 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 50060
||| || ||||| || | || ||||||| || || ||||| | ||||||||| | ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 50061 AAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA 50120
||| ||| |||||| |||||||| || || ||||| |||| || ||| || || |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 50121 ACTGGC-GCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177
| | || | | | | || | |||| | |||||||||||| || ||||| ||||| ||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 50178 CATCGTTTCTATGGCATTAAAGAG 50201
| ||||| || ||||| || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020
>seq3775
Length=22988
Score = 96.9 bits (106), Expect = 5e-15
Identities = 164/233 (70%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 174217 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 174276
|||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | ||
Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661
Query 174277 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGT 174336
||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| ||
Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601
Query 174337 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCT-TTC-TA 174394
|| |||| || | ||||||| ||| ||| ||||| || | ||| | ||| ||
Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543
Query 174395 ATGGGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 174447
||||| ||||| || | || | || |||||| || ||||| ||| ||||
Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTC 6491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717072038482160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |