Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 178 1e-39
seq3775 149 6e-31
seq28819 105 6e-18
>seq50502
Length=11567
Score = 178 bits (196), Expect = 1e-39
Identities = 196/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 13853 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912
|| ||| || || |||||||| ||||||||||||||||| || ||||| | ||| |
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972
||| |||||||||||||| || ||||| | |||||||||||||||||||||||| || ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032
||| || |||||| ||||| ||||| |||||||| || || | || ||| || ||
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14092
|| ||| | | |||||| | |||||| || | ||||||||||| | |
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 14093 CATTGTTTCAATAGCATTAAA 14113
| ||||||||||||||| ||
Sbjct 4997 TAATGTTTCAATAGCATTGAA 5017
Score = 120 bits (132), Expect = 3e-22
Identities = 177/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201
|| || || ||||| | | ||| |||||||| || || | ||||| || || || |||
Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178
Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261
|| |||||||| || | ||||| | ||||||||| ||||| ||| | | |
Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238
Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321
|||||||| || ||||||||| |||||||||||||| || | | | |||||| |
Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298
Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCA 14381
| ||| || | | | ||||| ||| | | | ||| || || | ||| ||||| |||
Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358
Query 14382 ACTGTCCAAAA 14392
|||||||||||
Sbjct 5359 ACTGTCCAAAA 5369
Score = 113 bits (124), Expect = 4e-20
Identities = 110/139 (79%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582
|||||||| ||||||||| ||| ||||| || | |||| || || | || ||||||||
Sbjct 4154 TAAAAATCTGCATCTAATGTAAAGACATTGTC-TGTTTGATTTGATGTTACTCCCATTTT 4212
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
|||||| |||| |||| | |||||||| ||||| |||||||| || || || ||| ||
Sbjct 4213 TTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGTC 4272
Query 13643 CATAAAATCAAATGGATTT 13661
||||||| ||| ||||||
Sbjct 4273 CATAAAACTAAAAGGATTT 4291
>seq3775
Length=22988
Score = 149 bits (164), Expect = 6e-31
Identities = 338/500 (68%), Gaps = 10/500 (2%)
Strand=Plus/Minus
Query 121024 TATTaaaaaaaa-aCTAGAAGGGTTGATATTAAAAGGAATAAATATTAATTATGTACCTG 121082
|||||||| | | ||||||| || || | ||| || || | | ||| ||| |
Sbjct 6733 TATTAAAAGCAGGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAG 6674
Query 121083 GAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATCCATGGCAGATT 121142
||||||||||||||||||| || ||||| ||||| | ||| ||| |||||||||
Sbjct 6673 GAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATA 6614
Query 121143 CTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTACACCAT 121202
|||| || || || || |||||| ||| || |||| |||| || ||||| | |
Sbjct 6613 CTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAA 6554
Query 121203 CAATATTTTTAATGGGGTGTTATGATAATGAAAGTAATAATTGGAAAACTGTAACTAAA- 121261
||||| |||||||| ||||||||| | ||| |||| |||||||| ||||| |||
Sbjct 6553 GTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAG 6494
Query 121262 TGC--TCCGGACACAACGATGACACATtaaaaaaagtacaaaaagaaataaagtttttaa 121319
| | || || | ||| | || | || ||| | ||| ||| || | |||||
Sbjct 6493 TTCATTCAGGTTTAGATGATAATGCAATGAATAAACTTCAATCTGAATTACAACCTTTAA 6434
Query 121320 aaattagtaaagatacaaaaaaaatcccaaaaTGG--TTAATAGTAAATAA-AATATATT 121376
| | | |||| || | | ||||||||| || || ||||| || ||| ||
Sbjct 6433 TGGTCCGAATAGATTCAGATTGTTTACCAAAATGGATTTCAT-GTAAAAAACAATCAAT- 6376
Query 121377 ATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTATGGGAAATATCCGGATCTA 121436
||| |||||| ||| |||||| || | | || ||||||||| | ||| ||
Sbjct 6375 -TCCGGATTTTTTAGCAAAAGATCCAGTAACAATGCCTGTTTGGGAAATAACTGGAGCTG 6317
Query 121437 GTTTTACAAAATCTATACATCACACAGCAGATGGTATTTCAATAAGATTTCCTAGATTTa 121496
||| ||||| || | || |||||| |||| ||||||||||||||||| | | |
Sbjct 6316 AATTTTCAAAAGCTGAAGCACATACAGCAAATGGAATTTCAATAAGATTTCCACGCATAA 6257
Query 121497 aaaaaaTTAGATATGATAAA 121516
|| |||| | ||||||||
Sbjct 6256 CAAGAATTCGCGATGATAAA 6237
>seq28819
Length=13211
Score = 105 bits (116), Expect = 6e-18
Identities = 207/302 (69%), Gaps = 8/302 (3%)
Strand=Plus/Minus
Query 11323 CTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCGATCGCCTC 11382
||||| || || |||||| | | |||| |||| | ||| || | ||||| || |
Sbjct 8355 CTTCTACAAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCAC 8296
Query 11383 TTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTTACCCCTAT 11442
||| | | ||| ||||| | || ||||| |||| ||| || | || || | ||
Sbjct 8295 GTTTTACTTGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGAT 8236
Query 11443 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11502
|||| ||||| | || || |||| | ||| ||| || | || | ||| ||||| |
Sbjct 8235 AATCCTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAAC 8176
Query 11503 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA--TCAGTTTTAAC 11560
||| ||||| ||||||||| | || ||| || || || || || ||||||||||
Sbjct 8175 GTGGTGCTATACGTCCATAAGAACCTTCTGG--TACATGAATTTGTAAATCAGTTTTAAT 8118
Query 11561 TAAAATTCTTT--CTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATATCCT 11618
| |||||||| |||| | | ||| ||||||| || ||||| | ||||||| ||||
Sbjct 8117 T--AATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCA 8060
Query 11619 GC 11620
||
Sbjct 8059 GC 8058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478928689199600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |