Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq50502 178 1e-39 seq3775 149 6e-31 seq28819 105 6e-18 >seq50502 Length=11567 Score = 178 bits (196), Expect = 1e-39 Identities = 196/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 13853 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912 || ||| || || |||||||| ||||||||||||||||| || ||||| | ||| | Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972 ||| |||||||||||||| || ||||| | |||||||||||||||||||||||| || || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 ||| || |||||| ||||| ||||| |||||||| || || | || ||| || || Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14092 || ||| | | |||||| | |||||| || | ||||||||||| | | Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 14093 CATTGTTTCAATAGCATTAAA 14113 | ||||||||||||||| || Sbjct 4997 TAATGTTTCAATAGCATTGAA 5017 Score = 120 bits (132), Expect = 3e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || || ||||| | | ||| |||||||| || || | ||||| || || || ||| Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || |||||||| || | ||||| | ||||||||| ||||| ||| | | | Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 |||||||| || ||||||||| |||||||||||||| || | | | |||||| | Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCA 14381 | ||| || | | | ||||| ||| | | | ||| || || | ||| ||||| ||| Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358 Query 14382 ACTGTCCAAAA 14392 ||||||||||| Sbjct 5359 ACTGTCCAAAA 5369 Score = 113 bits (124), Expect = 4e-20 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 |||||||| ||||||||| ||| ||||| || | |||| || || | || |||||||| Sbjct 4154 TAAAAATCTGCATCTAATGTAAAGACATTGTC-TGTTTGATTTGATGTTACTCCCATTTT 4212 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| |||| |||| | |||||||| ||||| |||||||| || || || ||| || Sbjct 4213 TTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGTC 4272 Query 13643 CATAAAATCAAATGGATTT 13661 ||||||| ||| |||||| Sbjct 4273 CATAAAACTAAAAGGATTT 4291 >seq3775 Length=22988 Score = 149 bits (164), Expect = 6e-31 Identities = 338/500 (68%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 121024 TATTaaaaaaaa-aCTAGAAGGGTTGATATTAAAAGGAATAAATATTAATTATGTACCTG 121082 |||||||| | | ||||||| || || | ||| || || | | ||| ||| | Sbjct 6733 TATTAAAAGCAGGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAG 6674 Query 121083 GAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATCCATGGCAGATT 121142 ||||||||||||||||||| || ||||| ||||| | ||| ||| ||||||||| Sbjct 6673 GAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATA 6614 Query 121143 CTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTACACCAT 121202 |||| || || || || |||||| ||| || |||| |||| || ||||| | | Sbjct 6613 CTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAA 6554 Query 121203 CAATATTTTTAATGGGGTGTTATGATAATGAAAGTAATAATTGGAAAACTGTAACTAAA- 121261 ||||| |||||||| ||||||||| | ||| |||| |||||||| ||||| ||| Sbjct 6553 GTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAG 6494 Query 121262 TGC--TCCGGACACAACGATGACACATtaaaaaaagtacaaaaagaaataaagtttttaa 121319 | | || || | ||| | || | || ||| | ||| ||| || | ||||| Sbjct 6493 TTCATTCAGGTTTAGATGATAATGCAATGAATAAACTTCAATCTGAATTACAACCTTTAA 6434 Query 121320 aaattagtaaagatacaaaaaaaatcccaaaaTGG--TTAATAGTAAATAA-AATATATT 121376 | | | |||| || | | ||||||||| || || ||||| || ||| || Sbjct 6433 TGGTCCGAATAGATTCAGATTGTTTACCAAAATGGATTTCAT-GTAAAAAACAATCAAT- 6376 Query 121377 ATCCAGATTTTGTAGTTTGTGATCCaaaaaaaTCACAGGTATGGGAAATATCCGGATCTA 121436 ||| |||||| ||| |||||| || | | || ||||||||| | ||| || Sbjct 6375 -TCCGGATTTTTTAGCAAAAGATCCAGTAACAATGCCTGTTTGGGAAATAACTGGAGCTG 6317 Query 121437 GTTTTACAAAATCTATACATCACACAGCAGATGGTATTTCAATAAGATTTCCTAGATTTa 121496 ||| ||||| || | || |||||| |||| ||||||||||||||||| | | | Sbjct 6316 AATTTTCAAAAGCTGAAGCACATACAGCAAATGGAATTTCAATAAGATTTCCACGCATAA 6257 Query 121497 aaaaaaTTAGATATGATAAA 121516 || |||| | |||||||| Sbjct 6256 CAAGAATTCGCGATGATAAA 6237 >seq28819 Length=13211 Score = 105 bits (116), Expect = 6e-18 Identities = 207/302 (69%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 11323 CTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCGATCGCCTC 11382 ||||| || || |||||| | | |||| |||| | ||| || | ||||| || | Sbjct 8355 CTTCTACAAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCAC 8296 Query 11383 TTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTTACCCCTAT 11442 ||| | | ||| ||||| | || ||||| |||| ||| || | || || | || Sbjct 8295 GTTTTACTTGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGAT 8236 Query 11443 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11502 |||| ||||| | || || |||| | ||| ||| || | || | ||| ||||| | Sbjct 8235 AATCCTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAAC 8176 Query 11503 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA--TCAGTTTTAAC 11560 ||| ||||| ||||||||| | || ||| || || || || || |||||||||| Sbjct 8175 GTGGTGCTATACGTCCATAAGAACCTTCTGG--TACATGAATTTGTAAATCAGTTTTAAT 8118 Query 11561 TAAAATTCTTT--CTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATATCCT 11618 | |||||||| |||| | | ||| ||||||| || ||||| | ||||||| |||| Sbjct 8117 T--AATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCA 8060 Query 11619 GC 11620 || Sbjct 8059 GC 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478928689199600