Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq50502 178 1e-39 seq3775 147 2e-30 seq28819 114 1e-20 >seq50502 Length=11567 Score = 178 bits (196), Expect = 1e-39 Identities = 196/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 13641 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 || ||| || || |||||||| ||||||||||||||||| || ||||| | ||| | Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 ||| |||||||||||||| || ||||| | |||||||||||||||||||||||| || || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 || ||| |||||| ||||| ||||| |||||||| || || | || ||| || || Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 || ||| ||| |||||| | |||||| || | ||||||||||| | | Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 13881 CATTGTTTCGATTGCATTGAA 13901 | |||||| || |||||||| Sbjct 4997 TAATGTTTCAATAGCATTGAA 5017 Score = 123 bits (136), Expect = 2e-23 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || || ||||| | | ||| |||||||| || || | ||||| || || || ||| Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || ||||||||||| | ||||| | |||||| || ||||| ||| | | Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 |||||||| |||||||||||| |||||||||||||| || | | | |||||| | Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169 | ||| || | | | ||||| ||| | || | ||| || || | ||| ||||| ||| Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358 Query 14170 ACTGTCCAAAA 14180 ||||||||||| Sbjct 5359 ACTGTCCAAAA 5369 Score = 113 bits (124), Expect = 4e-20 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370 |||||||| ||||||||| ||| ||||| || | |||| || || | || |||||||| Sbjct 4154 TAAAAATCTGCATCTAATGTAAAGACATTGTC-TGTTTGATTTGATGTTACTCCCATTTT 4212 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| |||| |||| | |||||||||||||| |||||||| || || || ||| || Sbjct 4213 TTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGTC 4272 Query 13431 CATAAAATCGAATGGATTT 13449 ||||||| || |||||| Sbjct 4273 CATAAAACTAAAAGGATTT 4291 >seq3775 Length=22988 Score = 147 bits (162), Expect = 2e-30 Identities = 330/486 (68%), Gaps = 11/486 (2%) Strand=Plus/Minus Query 120752 TAGAAGGGTTGATATTAAAAGGAATAAATATCGATTATGTACCTGGAAAAAGAGGTTGGT 120811 ||||||| || || | ||| || || | | | ||| ||| |||||||||||||||| Sbjct 6718 TAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTGGT 6659 Query 120812 TAAAGATGAAGAAGGATTACTTAAATGATGGATCCATGGCAGATTCTGCAGACTTAGTAG 120871 |||| || ||||| ||||| | ||| ||| ||||||||| |||| || || || | Sbjct 6658 TAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGTTG 6599 Query 120872 TTTTAGGATCATATTACGGTAAAGGCTCTAAGGGTGGCACACCATCGATATTTTTAATGG 120931 | |||||| ||| || |||| ||| || ||||||| | ||||| ||||||| Sbjct 6598 TCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAAGTATATTCTTAATGG 6539 Query 120932 GGTGCTATGATAATGAAAGTAATAATTGGAAAACAGTAACTAAA-TGC--TCCGGCCACG 120988 | || |||||| | ||| |||| |||||||||||||| ||| | | || || | Sbjct 6538 GATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAGTTCATTCAGGTTTAG 6479 Query 120989 ACGATGACACATTaaaaaaagtacaaaaagaaatagagtttttaaaaattagtaaagata 121048 | ||| | || | || ||| | ||| ||| || | ||||| | | | |||| Sbjct 6478 ATGATAATGCAATGAATAAACTTCAATCTGAATTACAACCTTTAATGGTCCGAATAGATT 6419 Query 121049 caaaaaaaatcccaaaaTGG--TTAATAGTAGATAA-AATATATTATCCAGATTTTGTAG 121105 || | | ||||||||| || || ||| | || ||| || ||| |||||| ||| Sbjct 6418 CAGATTGTTTACCAAAATGGATTTCAT-GTAAAAAACAATCAAT--TCCGGATTTTTTAG 6362 Query 121106 TTTGTGATCCaaaaaaaTCACAGGTGTGGGAAATATCGGGATCTAGTTTTACAAAATC-G 121164 |||||| || | | || ||||||||| | ||| || ||| ||||| | | Sbjct 6361 CAAAAGATCCAGTAACAATGCCTGTTTGGGAAATAACTGGAGCTGAATTTTCAAAAGCTG 6302 Query 121165 ATACATCACACAGCAGATGGGATTTCGATAAGATTTCCTAGATTTaaaaaaaTTAGATAT 121224 | || || |||||| |||| ||||| ||||||||||| | | | || |||| | || Sbjct 6301 AAGCA-CATACAGCAAATGGAATTTCAATAAGATTTCCACGCATAACAAGAATTCGCGAT 6243 Query 121225 GATAAA 121230 |||||| Sbjct 6242 GATAAA 6237 >seq28819 Length=13211 Score = 114 bits (126), Expect = 1e-20 Identities = 209/302 (69%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 11137 CTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACTCGATCGCCTC 11196 ||||| || || |||||| | | |||| |||| | |||||| | |||||| || | Sbjct 8355 CTTCTACAAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCAC 8296 Query 11197 TTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATGTTACCCCTAT 11256 ||| | | ||| ||||| | || ||||| |||| ||| || | || || | || Sbjct 8295 GTTTTACTTGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGAT 8236 Query 11257 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11316 |||| ||||| | || || |||| | ||| ||| || | || | ||| ||||| | Sbjct 8235 AATCCTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAAC 8176 Query 11317 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA--TCAGTTTTAAC 11374 ||| ||||| ||||||||| | || ||| || || || || || |||||||||| Sbjct 8175 GTGGTGCTATACGTCCATAAGAACCTTCTGG--TACATGAATTTGTAAATCAGTTTTAAT 8118 Query 11375 TAAAATTCTTT--CTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATATCCT 11432 | |||||||| |||| | | ||| ||||||| || ||||| | ||||||| |||| Sbjct 8117 T--AATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCA 8060 Query 11433 GC 11434 || Sbjct 8059 GC 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477791387306160