Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 178 1e-39
seq3775 147 2e-30
seq28819 114 1e-20
>seq50502
Length=11567
Score = 178 bits (196), Expect = 1e-39
Identities = 196/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 13641 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700
|| ||| || || |||||||| ||||||||||||||||| || ||||| | ||| |
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760
||| |||||||||||||| || ||||| | |||||||||||||||||||||||| || ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820
|| ||| |||||| ||||| ||||| |||||||| || || | || ||| || ||
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880
|| ||| ||| |||||| | |||||| || | ||||||||||| | |
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 13881 CATTGTTTCGATTGCATTGAA 13901
| |||||| || ||||||||
Sbjct 4997 TAATGTTTCAATAGCATTGAA 5017
Score = 123 bits (136), Expect = 2e-23
Identities = 178/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
|| || || ||||| | | ||| |||||||| || || | ||||| || || || |||
Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178
Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049
|| ||||||||||| | ||||| | |||||| || ||||| ||| | |
Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238
Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109
|||||||| |||||||||||| |||||||||||||| || | | | |||||| |
Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGA 5298
Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169
| ||| || | | | ||||| ||| | || | ||| || || | ||| ||||| |||
Sbjct 5299 CGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCA 5358
Query 14170 ACTGTCCAAAA 14180
|||||||||||
Sbjct 5359 ACTGTCCAAAA 5369
Score = 113 bits (124), Expect = 4e-20
Identities = 110/139 (79%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370
|||||||| ||||||||| ||| ||||| || | |||| || || | || ||||||||
Sbjct 4154 TAAAAATCTGCATCTAATGTAAAGACATTGTC-TGTTTGATTTGATGTTACTCCCATTTT 4212
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
|||||| |||| |||| | |||||||||||||| |||||||| || || || ||| ||
Sbjct 4213 TTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGTC 4272
Query 13431 CATAAAATCGAATGGATTT 13449
||||||| || ||||||
Sbjct 4273 CATAAAACTAAAAGGATTT 4291
>seq3775
Length=22988
Score = 147 bits (162), Expect = 2e-30
Identities = 330/486 (68%), Gaps = 11/486 (2%)
Strand=Plus/Minus
Query 120752 TAGAAGGGTTGATATTAAAAGGAATAAATATCGATTATGTACCTGGAAAAAGAGGTTGGT 120811
||||||| || || | ||| || || | | | ||| ||| ||||||||||||||||
Sbjct 6718 TAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTGGT 6659
Query 120812 TAAAGATGAAGAAGGATTACTTAAATGATGGATCCATGGCAGATTCTGCAGACTTAGTAG 120871
|||| || ||||| ||||| | ||| ||| ||||||||| |||| || || || |
Sbjct 6658 TAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGTTG 6599
Query 120872 TTTTAGGATCATATTACGGTAAAGGCTCTAAGGGTGGCACACCATCGATATTTTTAATGG 120931
| |||||| ||| || |||| ||| || ||||||| | ||||| |||||||
Sbjct 6598 TCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAAGTATATTCTTAATGG 6539
Query 120932 GGTGCTATGATAATGAAAGTAATAATTGGAAAACAGTAACTAAA-TGC--TCCGGCCACG 120988
| || |||||| | ||| |||| |||||||||||||| ||| | | || || |
Sbjct 6538 GATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAGTTCATTCAGGTTTAG 6479
Query 120989 ACGATGACACATTaaaaaaagtacaaaaagaaatagagtttttaaaaattagtaaagata 121048
| ||| | || | || ||| | ||| ||| || | ||||| | | | ||||
Sbjct 6478 ATGATAATGCAATGAATAAACTTCAATCTGAATTACAACCTTTAATGGTCCGAATAGATT 6419
Query 121049 caaaaaaaatcccaaaaTGG--TTAATAGTAGATAA-AATATATTATCCAGATTTTGTAG 121105
|| | | ||||||||| || || ||| | || ||| || ||| |||||| |||
Sbjct 6418 CAGATTGTTTACCAAAATGGATTTCAT-GTAAAAAACAATCAAT--TCCGGATTTTTTAG 6362
Query 121106 TTTGTGATCCaaaaaaaTCACAGGTGTGGGAAATATCGGGATCTAGTTTTACAAAATC-G 121164
|||||| || | | || ||||||||| | ||| || ||| ||||| | |
Sbjct 6361 CAAAAGATCCAGTAACAATGCCTGTTTGGGAAATAACTGGAGCTGAATTTTCAAAAGCTG 6302
Query 121165 ATACATCACACAGCAGATGGGATTTCGATAAGATTTCCTAGATTTaaaaaaaTTAGATAT 121224
| || || |||||| |||| ||||| ||||||||||| | | | || |||| | ||
Sbjct 6301 AAGCA-CATACAGCAAATGGAATTTCAATAAGATTTCCACGCATAACAAGAATTCGCGAT 6243
Query 121225 GATAAA 121230
||||||
Sbjct 6242 GATAAA 6237
>seq28819
Length=13211
Score = 114 bits (126), Expect = 1e-20
Identities = 209/302 (69%), Gaps = 8/302 (3%)
Strand=Plus/Minus
Query 11137 CTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACTCGATCGCCTC 11196
||||| || || |||||| | | |||| |||| | |||||| | |||||| || |
Sbjct 8355 CTTCTACAAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCAC 8296
Query 11197 TTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATGTTACCCCTAT 11256
||| | | ||| ||||| | || ||||| |||| ||| || | || || | ||
Sbjct 8295 GTTTTACTTGAAAATCATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGAT 8236
Query 11257 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11316
|||| ||||| | || || |||| | ||| ||| || | || | ||| ||||| |
Sbjct 8235 AATCCTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAAC 8176
Query 11317 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATA--TCAGTTTTAAC 11374
||| ||||| ||||||||| | || ||| || || || || || ||||||||||
Sbjct 8175 GTGGTGCTATACGTCCATAAGAACCTTCTGG--TACATGAATTTGTAAATCAGTTTTAAT 8118
Query 11375 TAAAATTCTTT--CTTTTGATTTAACGATATAATCATAAGCACTATATAAATCATATCCT 11432
| |||||||| |||| | | ||| ||||||| || ||||| | ||||||| ||||
Sbjct 8117 T--AATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCA 8060
Query 11433 GC 11434
||
Sbjct 8059 GC 8058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477791387306160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |