Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 702 0.0
seq50502 197 2e-45
seq3775 96.9 5e-15
seq28819 86.0 8e-12
>seq69808
Length=9325
Score = 702 bits (778), Expect = 0.0
Identities = 1270/1844 (69%), Gaps = 28/1844 (2%)
Strand=Plus/Minus
Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886
||| || |||| ||| ||||| || ||||||| ||| | ||||||| |||||||||||
Sbjct 8244 TTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAATGCAT 8185
Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946
|||||| ||| | || || |||| |||||||| | || ||||| |||||
Sbjct 8184 TGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTCTGATC 8125
Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTTCCCAA 71004
||||| || || | ||||||||||||| || | || |||| || ||||||||||
Sbjct 8124 AATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTTCCCAA 8067
Query 71005 ATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCC 71060
| |||||||| || || | || | || ||| | || | |||| | || || ||
Sbjct 8066 ACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATAGAACC 8008
Query 71061 ACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAAC 71120
|| || |||||| || ||||||| || || |||| |||||| | || |||||| |
Sbjct 8007 ACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTTAAATC 7948
Query 71121 TCT-AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 71179
| | || ||| | |||||||||| |||||| ||||| ||||| | |||| || |
Sbjct 7947 TTTTAATAAGAA-ATGATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGA 7889
Query 71180 TATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 71239
|||| ||||| || || | ||| || ||||| || |||||||| || |||||||| |
Sbjct 7888 TATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTG 7829
Query 71240 TCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTA 71299
| ||||| ||||| | || | | ||||| | ||||||| | ||||| ||||| |
Sbjct 7828 TTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAA 7769
Query 71300 GAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGC 71359
| | ||||||||| ||||| | |||| || |
Sbjct 7768 GTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAGTATAC 7709
Query 71360 CGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419
| | ||| | |||||| ||||||| || |||| || | | ||| |||| ||| |
Sbjct 7708 CTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGC 7649
Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479
|||| ||||||||||| ||||||||||| ||||| || || | | ||| | | ||||
Sbjct 7648 AACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTG 7589
Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGC 71539
|||| || ||| |||| ||| | | |||||| || || ||||| ||||| ||||
Sbjct 7588 CTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGC 7529
Query 71540 CAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 71599
||||||| || |||| || | ||| || ||| |||||||| | |||||||||||
Sbjct 7528 CAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAAT 7469
Query 71600 TAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTT 71656
||||||| ||||||||||| | ||||| | || ||| |||| || || || ||||
Sbjct 7468 TAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTTAAGTT 7412
Query 71657 TGAGAAAATCAAATCTCCCAT---CTATTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713
| ||||||| || | || || | ||||||| || || |||| || || | ||
Sbjct 7411 TTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAAT 7352
Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773
||||||| |||| |||| | | | ||||| | |||||| || || ||||||||||
Sbjct 7351 TACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTAC 7292
Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833
| || ||||| || | |||||||||||||| ||| ||||||||||| ||||| | |
Sbjct 7291 ATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACA 7232
Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893
|| | |||||||||||||||| |||||||| || || || ||| | || || |
Sbjct 7231 TATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACGTGCTT 7172
Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953
| ||| | || || | ||| |||| |||| |||| | | | || || | |
Sbjct 7171 TAATTGTTTTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTT 7112
Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013
| ||||| |||| ||| |||||||||| || |||||||| |||||||| | |||
Sbjct 7111 CACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTATCAT 7052
Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 72073
|| | | || ||||||||||| | ||| |||||||| | || ||||| ||| || |
Sbjct 7051 CAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAG 6992
Query 72074 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 72133
| ||| || || |||| ||||| ||||| | || | || | | |||||| | ||
Sbjct 6991 CACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCAT 6932
Query 72134 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGT 72193
|||| ||||| || || || || | | || || ||||| || || || ||||| | |
Sbjct 6931 GCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACAT 6872
Query 72194 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 72253
||||||| |||||| | || | |||||||| | | |||||| ||| |||||| |
Sbjct 6871 ATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTG 6812
Query 72254 TCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCC 72311
| || | || | | || | | ||| || | || ||| || || || || ||
Sbjct 6811 TGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATT--TATTCCAATACCACC 6754
Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371
|| |||| || || | ||||||| ||| | | | | | || || || || |||
Sbjct 6753 AGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATC 6694
Query 72372 ATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430
||| | || |||||| || |||||| || | ||| |||||| ||| | ||| ||
Sbjct 6693 ATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAA 6635
Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490
|||| || || || || || ||||| | ||| || | ||||| || || ||||||
Sbjct 6634 ATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAA 6575
Query 72491 CTGATTCTATA-TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549
| | || ||| | || | ||||| || || || ||||||||||||||||| || |||
Sbjct 6574 CAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATGTTGTGGT 6516
Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609
|||||| | || || ||| ||||| ||||| || ||| |||| || ||||||||||||
Sbjct 6515 CTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCA 6456
Query 72610 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653
||||| || || ||| || || || |||||||| |||||||
Sbjct 6455 AAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412
>seq50502
Length=11567
Score = 197 bits (218), Expect = 2e-45
Identities = 209/273 (77%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||| | ||| || || || |||| || |||||||||||||||| |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| ||||| || || ||||| | || || |||| ||||||||| || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504
| | | |||||| || || || || ||| |||||||||||| || || |||||| ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 42505 AAAATATTTTTCGTCCGGT-GTTAATTTATTCCAATCATTGATATCTTTAGATATATCTA 42563
||||| ||| ||| | |||||||| | ||| | | |||||||| |||| ||| |
Sbjct 5292 AAAATGACGTTC-TCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAA 5350
Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
||||||| || ||||||||||||||||| ||||
Sbjct 5351 CTTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 150 bits (166), Expect = 2e-31
Identities = 193/264 (73%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105
|||||| || ||||| |||||||| ||||| || || || || ||||| | ||||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165
||| || ||||| || | || ||||||| || || ||||| | ||||||||||| ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225
||| |||| |||||| |||||||| || || ||||| ||||||| ||| || || |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 42226 ACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282
| || | | | || ||||| | |||||||||||| || ||||| ||||| ||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 42283 CATCGTTTCTATGGCATTAAAGAG 42306
| ||||| || ||||| || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020
>seq3775
Length=22988
Score = 96.9 bits (106), Expect = 5e-15
Identities = 164/233 (70%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 165566 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 165625
|||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | ||
Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661
Query 165626 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 165685
||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| ||
Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601
Query 165686 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCT-TTC-TA 165743
|| |||| || | ||||||| ||| ||| ||||| || | ||| | ||| ||
Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543
Query 165744 ATGGGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 165796
||||| ||||| || | || | || |||||| || ||||| ||| ||||
Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTC 6491
>seq28819
Length=13211
Score = 86.0 bits (94), Expect = 8e-12
Identities = 243/361 (67%), Gaps = 17/361 (5%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
||||||||| ||||| ||| | || | || || || | || || ||||| |
Sbjct 8408 TCCAGTTGAACCAAAACCTCCCTCACCACGTTCAGTTTCATTCAAAGTTTTCTCTTCTAC 8349
Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCC-CGTATTTA 39916
|||||||||||| | || | || | || | || || |||| ||| || ||| ||||
Sbjct 8348 AAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCACGT-TTTA 8290
Query 39917 CATTGAAAGTACATTTTC--CATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 39974
| |||||| | ||||||| || ||||| | | || |||| ||||| | ||||||
Sbjct 8289 C-TTGAAAAT-CATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGATAATC 8232
Query 39975 TTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGG 40031
|| || | ||||||| |||| | |||||| | ||||| | || ||||| | ||
Sbjct 8231 CTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAACGTGG 8172
Query 40032 AGCTATTCTACCATAGCAGAA-CTTAGG---CATGGACATACTAATATCTGTCTTAATTA 40087
||||| | ||||| |||| ||| | ||| || | ||| ||| || |||||||
Sbjct 8171 TGCTATACGTCCATA--AGAACCTTCTGGTACAT-GAATTTGTAA-ATCAGTTTTAATTA 8116
Query 40088 ACTGTCTTTCTCCCGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGG 40147
| | | | || | || | | |||||||||| || || | |||||| ||||||| |
Sbjct 8115 ATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCAGCTG 8056
Query 40148 C 40148
|
Sbjct 8055 C 8055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670020964643440
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