Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq69808 702 0.0 seq50502 197 2e-45 seq3775 96.9 5e-15 seq28819 86.0 8e-12 >seq69808 Length=9325 Score = 702 bits (778), Expect = 0.0 Identities = 1270/1844 (69%), Gaps = 28/1844 (2%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || |||| ||| ||||| || ||||||| ||| | ||||||| ||||||||||| Sbjct 8244 TTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAATGCAT 8185 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 |||||| ||| | || || |||| |||||||| | || ||||| ||||| Sbjct 8184 TGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTCTGATC 8125 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTTCCCAA 71004 ||||| || || | ||||||||||||| || | || |||| || |||||||||| Sbjct 8124 AATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTTCCCAA 8067 Query 71005 ATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCC 71060 | |||||||| || || | || | || ||| | || | |||| | || || || Sbjct 8066 ACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATAGAACC 8008 Query 71061 ACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAAC 71120 || || |||||| || ||||||| || || |||| |||||| | || |||||| | Sbjct 8007 ACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTTAAATC 7948 Query 71121 TCT-AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 71179 | | || ||| | |||||||||| |||||| ||||| ||||| | |||| || | Sbjct 7947 TTTTAATAAGAA-ATGATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGA 7889 Query 71180 TATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 71239 |||| ||||| || || | ||| || ||||| || |||||||| || |||||||| | Sbjct 7888 TATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTG 7829 Query 71240 TCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTA 71299 | ||||| ||||| | || | | ||||| | ||||||| | ||||| ||||| | Sbjct 7828 TTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAA 7769 Query 71300 GAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGC 71359 | | ||||||||| ||||| | |||| || | Sbjct 7768 GTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAGTATAC 7709 Query 71360 CGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419 | | ||| | |||||| ||||||| || |||| || | | ||| |||| ||| | Sbjct 7708 CTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGC 7649 Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479 |||| ||||||||||| ||||||||||| ||||| || || | | ||| | | |||| Sbjct 7648 AACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTG 7589 Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGC 71539 |||| || ||| |||| ||| | | |||||| || || ||||| ||||| |||| Sbjct 7588 CTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGC 7529 Query 71540 CAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 71599 ||||||| || |||| || | ||| || ||| |||||||| | ||||||||||| Sbjct 7528 CAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAAT 7469 Query 71600 TAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTT 71656 ||||||| ||||||||||| | ||||| | || ||| |||| || || || |||| Sbjct 7468 TAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTTAAGTT 7412 Query 71657 TGAGAAAATCAAATCTCCCAT---CTATTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 | ||||||| || | || || | ||||||| || || |||| || || | || Sbjct 7411 TTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAAT 7352 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 ||||||| |||| |||| | | | ||||| | |||||| || || |||||||||| Sbjct 7351 TACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTAC 7292 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || ||||| || | |||||||||||||| ||| ||||||||||| ||||| | | Sbjct 7291 ATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACA 7232 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | |||||||||||||||| |||||||| || || || ||| | || || | Sbjct 7231 TATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACGTGCTT 7172 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | ||| | || || | ||| |||| |||| |||| | | | || || | | Sbjct 7171 TAATTGTTTTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTT 7112 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013 | ||||| |||| ||| |||||||||| || |||||||| |||||||| | ||| Sbjct 7111 CACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTATCAT 7052 Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 72073 || | | || ||||||||||| | ||| |||||||| | || ||||| ||| || | Sbjct 7051 CAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAG 6992 Query 72074 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 72133 | ||| || || |||| ||||| ||||| | || | || | | |||||| | || Sbjct 6991 CACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCAT 6932 Query 72134 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGT 72193 |||| ||||| || || || || | | || || ||||| || || || ||||| | | Sbjct 6931 GCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACAT 6872 Query 72194 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 72253 ||||||| |||||| | || | |||||||| | | |||||| ||| |||||| | Sbjct 6871 ATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTG 6812 Query 72254 TCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCC 72311 | || | || | | || | | ||| || | || ||| || || || || || Sbjct 6811 TGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATT--TATTCCAATACCACC 6754 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 || |||| || || | ||||||| ||| | | | | | || || || || ||| Sbjct 6753 AGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTGAATC 6694 Query 72372 ATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 ||| | || |||||| || |||||| || | ||| |||||| ||| | ||| || Sbjct 6693 ATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGCTGCAGCAA 6635 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 |||| || || || || || ||||| | ||| || | ||||| || || |||||| Sbjct 6634 ATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCAATAA 6575 Query 72491 CTGATTCTATA-TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549 | | || ||| | || | ||||| || || || ||||||||||||||||| || ||| Sbjct 6574 CAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATGTTGTGGT 6516 Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609 |||||| | || || ||| ||||| ||||| || ||| |||| || |||||||||||| Sbjct 6515 CTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAAACCA 6456 Query 72610 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||||| || || ||| || || || |||||||| ||||||| Sbjct 6455 AAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412 >seq50502 Length=11567 Score = 197 bits (218), Expect = 2e-45 Identities = 209/273 (77%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||| || || || |||| || |||||||||||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || || ||||| | || || |||| ||||||||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | | |||||| || || || || ||| |||||||||||| || || |||||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 42505 AAAATATTTTTCGTCCGGT-GTTAATTTATTCCAATCATTGATATCTTTAGATATATCTA 42563 ||||| ||| ||| | |||||||| | ||| | | |||||||| |||| ||| | Sbjct 5292 AAAATGACGTTC-TCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAA 5350 Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 ||||||| || ||||||||||||||||| |||| Sbjct 5351 CTTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 150 bits (166), Expect = 2e-31 Identities = 193/264 (73%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||||| || ||||| |||||||| ||||| || || || || ||||| | |||||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||| || ||||| || | || ||||||| || || ||||| | ||||||||||| || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| |||| |||||| |||||||| || || ||||| ||||||| ||| || || | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 42226 ACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | || | | | || ||||| | |||||||||||| || ||||| ||||| || Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 42283 CATCGTTTCTATGGCATTAAAGAG 42306 | ||||| || ||||| || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020 >seq3775 Length=22988 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 165566 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 165625 |||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | || Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661 Query 165626 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 165685 ||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| || Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601 Query 165686 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCT-TTC-TA 165743 || |||| || | ||||||| ||| ||| ||||| || | ||| | ||| || Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543 Query 165744 ATGGGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 165796 ||||| ||||| || | || | || |||||| || ||||| ||| |||| Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTC 6491 >seq28819 Length=13211 Score = 86.0 bits (94), Expect = 8e-12 Identities = 243/361 (67%), Gaps = 17/361 (5%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 ||||||||| ||||| ||| | || | || || || | || || ||||| | Sbjct 8408 TCCAGTTGAACCAAAACCTCCCTCACCACGTTCAGTTTCATTCAAAGTTTTCTCTTCTAC 8349 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCC-CGTATTTA 39916 |||||||||||| | || | || | || | || || |||| ||| || ||| |||| Sbjct 8348 AAGTTCTGGATAAAAAATTCTTTCGCAAATCAATTGTGCAATTCGATCACCACGT-TTTA 8290 Query 39917 CATTGAAAGTACATTTTC--CATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 39974 | |||||| | ||||||| || ||||| | | || |||| ||||| | |||||| Sbjct 8289 C-TTGAAAAT-CATTTTCAGAATGATTAAATAATACAACACCTAAATTTCCACGATAATC 8232 Query 39975 TTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGG 40031 || || | ||||||| |||| | |||||| | ||||| | || ||||| | || Sbjct 8231 CTCATCCACTACACCGGCTCCAACATCAATGAAATTTTTTACAGCAAGTCCAGAACGTGG 8172 Query 40032 AGCTATTCTACCATAGCAGAA-CTTAGG---CATGGACATACTAATATCTGTCTTAATTA 40087 ||||| | ||||| |||| ||| | ||| || | ||| ||| || ||||||| Sbjct 8171 TGCTATACGTCCATA--AGAACCTTCTGGTACAT-GAATTTGTAA-ATCAGTTTTAATTA 8116 Query 40088 ACTGTCTTTCTCCCGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGG 40147 | | | | || | || | | |||||||||| || || | |||||| ||||||| | Sbjct 8115 ATTCTTTCCCTTTAGCTGGAACATTATAATCGTATGCACTTTTTAAATCAAATCCAGCTG 8056 Query 40148 C 40148 | Sbjct 8055 C 8055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670020964643440