Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 131 2e-25
seq116239 116 4e-21
seq34035 100 3e-16
>seq69808
Length=9325
Score = 131 bits (144), Expect = 2e-25
Identities = 445/683 (65%), Gaps = 9/683 (1%)
Strand=Plus/Minus
Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610
|| |||||||| ||||| || | |||||||| || | || || ||||| ||
Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815
Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 156670
| | ||| ||||| || | || | || || || ||| ||| | | ||| | |
Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755
Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT-T 156729
|||| ||| ||| ||||||||| ||| ||||| | ||| |||| ||| || |
Sbjct 7754 CATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695
Query 156730 GCTACCGGCAAACGTGCTATAAGGCTCAC-TAACAGATGCCAGTTCGTAACTGGCCTCGA 156788
| | || || | || ||| | || ||| | || | |||| |||| ||||| |
Sbjct 7694 GAT-CCATCATATGTTTCATATGAACCATATAATTCA-GCTAATTCGCAACTAGCCTCTA 7637
Query 156789 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 156848
||| ||| ||| | |||||| ||||||| ||| ||| || | || ||
Sbjct 7636 ATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTT 7577
Query 156849 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGG 156908
| || || |||| | || ||||||||| || || ||||| | |||||| || || |
Sbjct 7576 CATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTG 7517
Query 156909 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAA 156968
| ||||| || | ||| ||||||||||| | | ||| || |||| ||||||||
Sbjct 7516 GTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAA 7457
Query 156969 TTTTATTCAAACTATCCACT-ACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 157027
||||||||||| | || | ||| ||| || | | | || ||||||| |
Sbjct 7456 TTTTATTCAAA-TTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATAT 7398
Query 157028 GTATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 157084
| | || | || | | | |||| | ||||| || |||| |||||| || || ||
Sbjct 7397 TTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATT 7338
Query 157085 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 157144
|| || || || |||||| || ||||| | ||||| ||| || ||||| || ||
Sbjct 7337 TCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCA 7278
Query 157145 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 157204
|| |||||| ||||| || || || || || || |||||||| || || || ||
Sbjct 7277 ATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCA 7218
Query 157205 GTTTCGGCTTGAATTTCTATGAT 157227
||||| ||||| ||| || ||
Sbjct 7217 GTTTCAACTTGAGATTCAATTAT 7195
>seq116239
Length=11340
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | ||| ||||||| ||| ||||| ||||| ||||||||||| |
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| || || || | ||| || |||||| | |||| |||||| ||||| || ||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| ||| ||| ||| | | ||| | ||||| | || || ||
Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || || || |||||||| || || |||||
Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778
>seq34035
Length=19351
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|||||||| | || | |||||||| | || || |||||||| ||||| |||||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | || || |||||||||||||| | || | |||||| ||||| |||||
Sbjct 10523 AAGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| |||||||| || || || ||| | | ||| | || || | |||||| ||
Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||| || | ||||| || || | ||||| || ||||| ||||||
Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATA 10356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506169625282080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |