Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq69808 131 2e-25 seq116239 116 4e-21 seq34035 100 3e-16 >seq69808 Length=9325 Score = 131 bits (144), Expect = 2e-25 Identities = 445/683 (65%), Gaps = 9/683 (1%) Strand=Plus/Minus Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610 || |||||||| ||||| || | |||||||| || | || || ||||| || Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815 Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 156670 | | ||| ||||| || | || | || || || ||| ||| | | ||| | | Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT-T 156729 |||| ||| ||| ||||||||| ||| ||||| | ||| |||| ||| || | Sbjct 7754 CATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695 Query 156730 GCTACCGGCAAACGTGCTATAAGGCTCAC-TAACAGATGCCAGTTCGTAACTGGCCTCGA 156788 | | || || | || ||| | || ||| | || | |||| |||| ||||| | Sbjct 7694 GAT-CCATCATATGTTTCATATGAACCATATAATTCA-GCTAATTCGCAACTAGCCTCTA 7637 Query 156789 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 156848 ||| ||| ||| | |||||| ||||||| ||| ||| || | || || Sbjct 7636 ATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTT 7577 Query 156849 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGG 156908 | || || |||| | || ||||||||| || || ||||| | |||||| || || | Sbjct 7576 CATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTG 7517 Query 156909 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAA 156968 | ||||| || | ||| ||||||||||| | | ||| || |||| |||||||| Sbjct 7516 GTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAA 7457 Query 156969 TTTTATTCAAACTATCCACT-ACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 157027 ||||||||||| | || | ||| ||| || | | | || ||||||| | Sbjct 7456 TTTTATTCAAA-TTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATAT 7398 Query 157028 GTATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 157084 | | || | || | | | |||| | ||||| || |||| |||||| || || || Sbjct 7397 TTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATT 7338 Query 157085 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 157144 || || || || |||||| || ||||| | ||||| ||| || ||||| || || Sbjct 7337 TCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCCA 7278 Query 157145 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 157204 || |||||| ||||| || || || || || || |||||||| || || || || Sbjct 7277 ATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCA 7218 Query 157205 GTTTCGGCTTGAATTTCTATGAT 157227 ||||| ||||| ||| || || Sbjct 7217 GTTTCAACTTGAGATTCAATTAT 7195 >seq116239 Length=11340 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| ||||||| ||| ||||| ||||| ||||||||||| | Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | ||| || |||||| | |||| |||||| ||||| || || Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| ||| ||| | | ||| | ||||| | || || || Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || |||||||| || || ||||| Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 >seq34035 Length=19351 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | || | |||||||| | || || |||||||| ||||| ||||| Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || |||||||||||||| | || | |||||| ||||| ||||| Sbjct 10523 AAGGTTCGTCCA-TCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || || || ||| | | ||| | || || | |||||| || Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || || | ||||| || ||||| |||||| Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATA 10356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506169625282080