Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21713 163 4e-35 >seq21713 Length=22343 Score = 163 bits (180), Expect = 4e-35 Identities = 381/569 (67%), Gaps = 8/569 (1%) Strand=Plus/Minus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || ||| |||||| |||| || || || || || || |||||||||| || | || Sbjct 18674 GAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGC--AGA 18617 Query 70119 ATGTAGACTGCGAGACAGACTATTCG--GGTCAGGGTGTTGATCAATTGCAGACAATCAT 70176 || || | | |||| | || || ||||| |||||||||| || | |||| Sbjct 18616 ATATAAAACATGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCAT 18557 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 || | || |||||||||| ||||| | || | ||| | | |||||||| Sbjct 18556 CGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAAT 18497 Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA 70296 || | | ||||||||||||| || || || ||| | ||| |||||| | | Sbjct 18496 CGACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTATTCAATTTTACGTGGCTAA 18437 Query 70297 TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 ||| |||| ||||| ||||||| || || || ||||| || || || || || Sbjct 18436 TGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTTT 18377 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 ||| || ||||| ||| || || | || ||||||| |||||||| | | | ||||| Sbjct 18376 TAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCA-CAAATTTAAAGC 18318 Query 70417 --GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 | | || || || |||||| | ||||| ||||| || ||||||||||| || ||||| Sbjct 18317 CTGGA-GATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCG 18259 Query 70475 TTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAA 70534 |||| | |||| | | || | ||| |||||||||| ||||| | || ||| Sbjct 18258 CTAAAAGAGCAATTGAATCGTGTGCCACGACCTTTTCCAAAGCTCATTATAAAACGAAAA 18199 Query 70535 GTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATAC 70594 |||||| || || ||||| | || |||||| ||| ||| ||| |||| ||| Sbjct 18198 GTTGAATGCATAGAAGATTTTACTTTTGATGATTTTGAAATGCAAGACTACAATCCTTAC 18139 Query 70595 CCTAAGATTCCCATGGTTCTGGCTGTTTA 70623 || || ||| ||||| |||| ||||| Sbjct 18138 CCGAAAATTAACATGGAAATGGCAGTTTA 18110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739824465687440