Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 123 2e-23
seq34035 111 1e-19
seq8255 98.7 7e-16
>seq116239
Length=11340
Score = 123 bits (136), Expect = 2e-23
Identities = 160/217 (74%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| ||||| || ||||| ||||||||||| | | || | || ||
Sbjct 4569 AACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTC 4628
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||| || ||||| | |||||||||||||| || |||||| ||||| |||||
Sbjct 4629 CAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTG 4688
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| |||||| || ||| |||| || || || || || || || ||||| ||||
Sbjct 4689 AATCTTTGCT-TTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTT 4747
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369
| || || | ||||||||||||||| ||||| |||||
Sbjct 4748 TTCCAGTTAAAGTTTTTACAAAAATCTGCAT-TTTGA 4783
>seq34035
Length=19351
Score = 111 bits (122), Expect = 1e-19
Identities = 155/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||||||| | || || |||||||| ||||| ||||| || ||| | || ||
Sbjct 10565 ACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCA 10506
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||| |||||| | || ||||||||||| || ||||| |||||||| ||
Sbjct 10505 AGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 10446
Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| || ||| |||| || ||||| ||| || || | || ||||| ||
Sbjct 10445 ATCTTAGCT-TTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTT 10387
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368
||||| |||||||| ||||| || ||||||||||
Sbjct 10386 CCCTGTAAGAGTTTTAACAAATATCTGCATATTTG 10352
>seq8255
Length=4873
Score = 98.7 bits (108), Expect = 7e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || ||||| |||||||||||| || | | | ||||
Sbjct 575 ACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTC 516
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||||||||||||| | || ||| | |||||||| ||| | || ||||||||| |
Sbjct 515 AATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGA 456
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| || ||| ||||| || | ||| || || || || ||||| |||
Sbjct 455 ATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTA 396
Query 15335 CCTGTCA 15341
|| ||||
Sbjct 395 CCAGTCA 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361590832419654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |