Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq116239 123 2e-23 seq34035 111 1e-19 seq8255 98.7 7e-16 >seq116239 Length=11340 Score = 123 bits (136), Expect = 2e-23 Identities = 160/217 (74%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| ||||| || ||||| ||||||||||| | | || | || || Sbjct 4569 AACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTC 4628 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || ||||| | |||||||||||||| || |||||| ||||| ||||| Sbjct 4629 CAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTG 4688 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| |||||| || ||| |||| || || || || || || || ||||| |||| Sbjct 4689 AATCTTTGCT-TTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTT 4747 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 | || || | ||||||||||||||| ||||| ||||| Sbjct 4748 TTCCAGTTAAAGTTTTTACAAAAATCTGCAT-TTTGA 4783 >seq34035 Length=19351 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| | || || |||||||| ||||| ||||| || ||| | || || Sbjct 10565 ACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCA 10506 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | || ||||||||||| || ||||| |||||||| || Sbjct 10505 AGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 10446 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| |||| || ||||| ||| || || | || ||||| || Sbjct 10445 ATCTTAGCT-TTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTT 10387 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 ||||| |||||||| ||||| || |||||||||| Sbjct 10386 CCCTGTAAGAGTTTTAACAAATATCTGCATATTTG 10352 >seq8255 Length=4873 Score = 98.7 bits (108), Expect = 7e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| |||||||||||| || | | | |||| Sbjct 575 ACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTC 516 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||||||||||||| | || ||| | |||||||| ||| | || ||||||||| | Sbjct 515 AATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGA 456 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || ||| ||||| || | ||| || || || || ||||| ||| Sbjct 455 ATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTA 396 Query 15335 CCTGTCA 15341 || |||| Sbjct 395 CCAGTCA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361590832419654