Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq116239 84.2 2e-11 >seq116239 Length=11340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| |||||||||| || ||| | | ||||||| || || || Sbjct 4582 GTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCCAATTGCTTTCCA 4641 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | | || ||||| || | ||| || ||||| ||| || ||| Sbjct 4642 GCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTA 4701 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | || || ||||| || | ||||| ||||| || ||||||||| Sbjct 4702 ACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTT 4761 Query 19025 TTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058 || |||||||| |||||||| | ||| | |||| Sbjct 4762 TTTACAAAAATCTGCATTTTGAGTCTTTCCTAAA 4795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413899317935836