Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq116239 113 3e-20 seq34035 100 2e-16 >seq116239 Length=11340 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || || ||||| || |||||||| ||||| | || ||| Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCC 4629 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| ||| || |||||||| || || | || |||||||| || || | Sbjct 4630 AATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGA 4689 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| ||||| || | ||| |||| || || |||||| Sbjct 4690 ATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTT 4749 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || | ||||||||| ||||| ||||| || Sbjct 4750 CCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 >seq34035 Length=19351 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || |||||||| || ||||||||||| || || |||||||| || | || || || Sbjct 10565 ACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCA 10506 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| || ||||||||||| || || | || || |||||||| || Sbjct 10505 AGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 10446 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| || || ||||| || || || ||||| || || Sbjct 10445 ATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTC 10386 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || ||||||||||| || || || ||||| ||| Sbjct 10385 CCTGTAAGAGTTTTAACAAATATCTGCATATTT 10353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318259739214012