Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 113 3e-20
seq34035 100 2e-16
>seq116239
Length=11340
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| | ||| || || ||||| || |||||||| ||||| | || |||
Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCC 4629
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
|||||||||||| ||| || |||||||| || || | || |||||||| || || |
Sbjct 4630 AATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGA 4689
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| ||||| || | ||| |||| || || ||||||
Sbjct 4690 ATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTT 4749
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || | ||||||||| ||||| ||||| ||
Sbjct 4750 CCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
>seq34035
Length=19351
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|| |||||||| || ||||||||||| || || |||||||| || | || || ||
Sbjct 10565 ACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCA 10506
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||| || ||| || ||||||||||| || || | || || |||||||| ||
Sbjct 10505 AGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 10446
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| || || ||||| || || || ||||| || ||
Sbjct 10445 ATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTC 10386
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| ||||||||||| || || || ||||| |||
Sbjct 10385 CCTGTAAGAGTTTTAACAAATATCTGCATATTT 10353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318259739214012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |