Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq116239 98.7 8e-16 >seq116239 Length=11340 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| ||||| ||||| ||||| ||||||||||| || || || ||| ||| Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCC 4629 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | |||||||| || | |||||| ||||| | Sbjct 4630 AATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGA 4689 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| ||| || | ||| | || || || |||| ||||| ||||| Sbjct 4690 ATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTT 4749 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || || || ||||| |||||||| |||||||| Sbjct 4750 CCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418905571939614