Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 149 5e-31
>seq50502
Length=11567
Score = 149 bits (164), Expect = 5e-31
Identities = 175/237 (74%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 13132 TAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAG 13191
|| |||||| ||||| | ||||||||||||||| || | ||||||||| | ||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 13192 CTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC 13251
|| ||||||||||||| ||| ||||| | ||||||||||| | |||||||||||| ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 13252 AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATA 13311
||| || ||| || ||||||||||| || ||||| || || | |||||||| |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 13312 CGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCA 13368
|| | |||||| | ||||| | ||||| | ||||||| |||||| ||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACA 4993
Score = 105 bits (116), Expect = 6e-18
Identities = 187/268 (70%), Gaps = 6/268 (2%)
Strand=Plus/Plus
Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480
||||| || || || || | ||| |||||||||||||||| |||||| || || |||||
Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178
Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG 13540
|| ||||||||||| | || || | | || ||||| ||||| ||| | |
Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238
Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAtt 13598
||||| || || || || ||| || |||||||| || || ||||| |||||| |
Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTG--AAATAAAAT 5296
Query 13599 ttttttCGTTTTCT-GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCC 13657
||| | || | || ||| ||| | | | ||||||||||||||| || ||
Sbjct 5297 GACGTTC-TCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCT 5355
Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCT 13685
||||| |||||||| || || ||||||
Sbjct 5356 TCAACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTT 12860
|||||||||| ||||| | ||| |||| || | |||||| | || |||||
Sbjct 4152 TTTAAAAATCTGCATCTAATGTAAAGACATTGTCTGTTTGATTTGATGTTACTCCCATTT 4211
Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920
||||||| || | |||| | |||||||||||||||||||| || || | |||||| |
Sbjct 4212 TTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGT 4271
Query 12921 CCATAAAATCGAAAGGATTTT 12941
|||||||| ||||||||||
Sbjct 4272 CCATAAAACTAAAAGGATTTT 4292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430282260202188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |