Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq50502 149 5e-31 >seq50502 Length=11567 Score = 149 bits (164), Expect = 5e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 13132 TAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAG 13191 || |||||| ||||| | ||||||||||||||| || | ||||||||| | |||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 13192 CTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC 13251 || ||||||||||||| ||| ||||| | ||||||||||| | |||||||||||| || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 13252 AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATA 13311 ||| || ||| || ||||||||||| || ||||| || || | |||||||| | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 13312 CGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCA 13368 || | |||||| | ||||| | ||||| | ||||||| |||||| || Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACA 4993 Score = 105 bits (116), Expect = 6e-18 Identities = 187/268 (70%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| || || || || | ||| |||||||||||||||| |||||| || || ||||| Sbjct 5119 ATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGA 5178 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG 13540 || ||||||||||| | || || | | || ||||| ||||| ||| | | Sbjct 5179 AAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGA 5238 Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAtt 13598 ||||| || || || || ||| || |||||||| || || ||||| |||||| | Sbjct 5239 TTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTG--AAATAAAAT 5296 Query 13599 ttttttCGTTTTCT-GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCC 13657 ||| | || | || ||| ||| | | | ||||||||||||||| || || Sbjct 5297 GACGTTC-TCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACTTCT 5355 Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCT 13685 ||||| |||||||| || || |||||| Sbjct 5356 TCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTT 12860 |||||||||| ||||| | ||| |||| || | |||||| | || ||||| Sbjct 4152 TTTAAAAATCTGCATCTAATGTAAAGACATTGTCTGTTTGATTTGATGTTACTCCCATTT 4211 Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 ||||||| || | |||| | |||||||||||||||||||| || || | |||||| | Sbjct 4212 TTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGT 4271 Query 12921 CCATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 4272 CCATAAAACTAAAAGGATTTT 4292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430282260202188