Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq34035 190 5e-43 seq116239 161 2e-34 seq82763 107 4e-18 seq98857 100 7e-16 seq8255 91.5 3e-13 seq52648 84.2 5e-11 >seq34035 Length=19351 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| || | |||||||| ||| || || || ||||| || || ||||| |||||| Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||| || || || |||||||| ||||| ||||||| | |||||||| ||||| Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| || ||||| ||||| |||||||| | ||||| ||||| ||| Sbjct 10463 ATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACC 10404 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| || ||||| || ||||| ||||| |||||||||||||| || Sbjct 10403 TCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354 >seq116239 Length=11340 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | ||| || | ||| | ||| ||||| || ||||| || || || Sbjct 4549 ATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCC 4608 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || ||||| || || | ||| |||||||||||||| | | |||||||| || Sbjct 4609 GACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGT 4668 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||||||| |||||||| | || || || || Sbjct 4669 GGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCA 4728 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 ||||| | |||||| || || ||||| | ||||||||||| |||||||||||| || Sbjct 4729 ACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTTGAGT 4785 >seq82763 Length=7752 Score = 107 bits (118), Expect = 4e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635 ||||||| ||| || |||||||| || || || ||| ||||| | ||| ||||||| Sbjct 4153 AAACTCATGATGATCTCTGGAATTCAGCTCAAATTCAATTGGTACAAGAAGGAAAAATGC 4212 Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695 || |||| ||| |||||||||||||||| || || | ||||||||| ||| || | Sbjct 4213 ATGGTTTTTTAAGAATGTATTGGGCTAAGAAAATTTTAGAATGGACTGAATCACCTGAAA 4272 Query 238696 AAGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732 |||| ||||| || | |||||| |||| |||||||| Sbjct 4273 AAGC-ATTAGAAATTGCAATTTATTTGAATGATAAATA 4309 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 237987 CAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATAAACAAGAATACGGT 238046 |||||||| || || || ||||||||| ||||||||||| |||| |||||||| | Sbjct 3486 CAAGTTGATGCACATAACATTGTACCTATATGGGAAGCATCAGATAAGCAAGAATATGCC 3545 Query 238047 GCTAGAACATTACGTAAGAAAATAAATGGTATGTTAGATACATATCTTACAGAATTTCCT 238106 || |||||| | || || ||||| ||||| | ||||||| ||| | ||||| || ||| Sbjct 3546 GCAAGAACAATTCGAAATAAAATTAATGGAAAATTAGATATTTATTTAACAGATTTCCCT 3605 Query 238107 GTAATAACTAAACATCCTTA 238126 | || ||||||||||| Sbjct 3606 CCAGTATTAAAACATCCTTA 3625 >seq98857 Length=3708 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || |||||| || | || |||| ||||||||||| | || |||| || |||||| Sbjct 3 TAATCAGATCATGTACGACTATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGA 62 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || ||||| ||||| || || || || |||||||| || |||||||| | |||||| Sbjct 63 TCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGAT 122 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| ||||| || || || || || ||||| | ||| Sbjct 123 GGTTCAACCTCGAGGGTGATTGTTTTTCCAGTTAATGT 160 Score = 87.8 bits (96), Expect = 4e-12 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC--GT 104405 ||||| | ||| | ||||| ||||| |||||||| |||||||||||||| | | | | Sbjct 1013 AGTACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAGAGTACGATCATAT 1072 Query 104406 CTTCTAGTTGTTTTCCAGC-AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 || | ||||||||||| || || | ||| || |||| ||| ||||| | |||||| ||| Sbjct 1073 CTACAAGTTGTTTTCCTGCGAAGATTTATTCTGTGTTAATCTGGAGGAAATCCTTCCTTA 1132 Query 104465 TC 104466 || Sbjct 1133 TC 1134 >seq8255 Length=4873 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || || || | || || | ||| |||| | |||||| ||| Sbjct 563 GTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTCAATTGTTTGCCA 504 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||||| |||||| || || || | || |||||| || |||| || | |||| Sbjct 503 GCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGAATTTTAGGTTTT 444 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| | ||| || | ||||| || || | || || ||||||||||| Sbjct 443 TCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTACCAGT 391 >seq52648 Length=20403 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||| ||||| | |||||||||||||| | ||| | || || |||||| | Sbjct 10618 GTAGA--CTTTTTGAATGTG-TAGTCAGATAGAGTACGACCATTATCAAGCTGTTTTTCG 10674 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| || |||||||| | ||| |||| || |||| || |||||||| | Sbjct 10675 GCAAATATTAATCTTTGTTGATCTGAAGGAATTCTCTCCTTATTTTGGATCTTTGCCTAA 10734 Query 104483 ACATTTT 104489 ||||||| Sbjct 10735 ACATTTT 10741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149432007990152