Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 190 5e-43
seq116239 161 2e-34
seq82763 107 4e-18
seq98857 100 7e-16
seq8255 91.5 3e-13
seq52648 84.2 5e-11
>seq34035
Length=19351
Score = 190 bits (210), Expect = 5e-43
Identities = 180/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| |||| || | |||||||| ||| || || || ||||| || || ||||| ||||||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| |||| || || || |||||||| ||||| ||||||| | |||||||| |||||
Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||||||||| || ||||| ||||| |||||||| | ||||| ||||| |||
Sbjct 10463 ATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACC 10404
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| || ||||| || ||||| ||||| |||||||||||||| ||
Sbjct 10403 TCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354
>seq116239
Length=11340
Score = 161 bits (178), Expect = 2e-34
Identities = 178/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | ||| | ||| || | ||| | ||| ||||| || ||||| || || ||
Sbjct 4549 ATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCC 4608
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || ||||| || || | ||| |||||||||||||| | | |||||||| ||
Sbjct 4609 GACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGT 4668
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || |||||||||||||| |||||||| | || || || ||
Sbjct 4669 GGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCA 4728
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566
||||| | |||||| || || ||||| | ||||||||||| |||||||||||| ||
Sbjct 4729 ACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTTGAGT 4785
>seq82763
Length=7752
Score = 107 bits (118), Expect = 4e-18
Identities = 120/158 (76%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635
||||||| ||| || |||||||| || || || ||| ||||| | ||| |||||||
Sbjct 4153 AAACTCATGATGATCTCTGGAATTCAGCTCAAATTCAATTGGTACAAGAAGGAAAAATGC 4212
Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695
|| |||| ||| |||||||||||||||| || || | ||||||||| ||| || |
Sbjct 4213 ATGGTTTTTTAAGAATGTATTGGGCTAAGAAAATTTTAGAATGGACTGAATCACCTGAAA 4272
Query 238696 AAGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732
|||| ||||| || | |||||| |||| ||||||||
Sbjct 4273 AAGC-ATTAGAAATTGCAATTTATTTGAATGATAAATA 4309
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 237987 CAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATAAACAAGAATACGGT 238046
|||||||| || || || ||||||||| ||||||||||| |||| |||||||| |
Sbjct 3486 CAAGTTGATGCACATAACATTGTACCTATATGGGAAGCATCAGATAAGCAAGAATATGCC 3545
Query 238047 GCTAGAACATTACGTAAGAAAATAAATGGTATGTTAGATACATATCTTACAGAATTTCCT 238106
|| |||||| | || || ||||| ||||| | ||||||| ||| | ||||| || |||
Sbjct 3546 GCAAGAACAATTCGAAATAAAATTAATGGAAAATTAGATATTTATTTAACAGATTTCCCT 3605
Query 238107 GTAATAACTAAACATCCTTA 238126
| || |||||||||||
Sbjct 3606 CCAGTATTAAAACATCCTTA 3625
>seq98857
Length=3708
Score = 100 bits (110), Expect = 7e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| |||||| || | || |||| ||||||||||| | || |||| || ||||||
Sbjct 3 TAATCAGATCATGTACGACTATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGA 62
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|| ||||| ||||| || || || || |||||||| || |||||||| | ||||||
Sbjct 63 TCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGAT 122
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| ||||| || || || || || ||||| | |||
Sbjct 123 GGTTCAACCTCGAGGGTGATTGTTTTTCCAGTTAATGT 160
Score = 87.8 bits (96), Expect = 4e-12
Identities = 94/122 (77%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC--GT 104405
||||| | ||| | ||||| ||||| |||||||| |||||||||||||| | | | |
Sbjct 1013 AGTACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAGAGTACGATCATAT 1072
Query 104406 CTTCTAGTTGTTTTCCAGC-AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
|| | ||||||||||| || || | ||| || |||| ||| ||||| | |||||| |||
Sbjct 1073 CTACAAGTTGTTTTCCTGCGAAGATTTATTCTGTGTTAATCTGGAGGAAATCCTTCCTTA 1132
Query 104465 TC 104466
||
Sbjct 1133 TC 1134
>seq8255
Length=4873
Score = 91.5 bits (100), Expect = 3e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || ||||| || || || | || || | ||| |||| | |||||| |||
Sbjct 563 GTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTCAATTGTTTGCCA 504
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||||| |||||| || || || | || |||||| || |||| || | ||||
Sbjct 503 GCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGAATTTTAGGTTTT 444
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|||||| | ||| || | ||||| || || | || || |||||||||||
Sbjct 443 TCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTACCAGT 391
>seq52648
Length=20403
Score = 84.2 bits (92), Expect = 5e-11
Identities = 96/127 (76%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| |||| ||||| | |||||||||||||| | ||| | || || |||||| |
Sbjct 10618 GTAGA--CTTTTTGAATGTG-TAGTCAGATAGAGTACGACCATTATCAAGCTGTTTTTCG 10674
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| |||| || |||||||| | ||| |||| || |||| || |||||||| |
Sbjct 10675 GCAAATATTAATCTTTGTTGATCTGAAGGAATTCTCTCCTTATTTTGGATCTTTGCCTAA 10734
Query 104483 ACATTTT 104489
|||||||
Sbjct 10735 ACATTTT 10741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1149432007990152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |