Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005344.1
Length=39043
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 158 3e-34
>seq30817
Length=4284
Score = 158 bits (174), Expect = 3e-34
Identities = 252/359 (70%), Gaps = 6/359 (2%)
Strand=Plus/Minus
Query 21567 CCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCC 21626
||||| | ||||||||| | || |||| || | ||||| || || | | |||
Sbjct 373 CCACCTAACATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCGATCT 314
Query 21627 TGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 21686
|| |||||||| ||||||||||| | ||| | || ||||| | ||| || | |||
Sbjct 313 TGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAG 254
Query 21687 CCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGC 21746
|||||| ||| ||||| | |||| ||| || | ||| ||| || ||||| ||||||
Sbjct 253 CCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGC 194
Query 21747 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 21806
|| || || | || ||| || |||||||| |||||||| ||| || || ||
Sbjct 193 CATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCC 134
Query 21807 ACTGTAAGGTTTGCAAATGCCGTTC--CTGAT-GGTGAATATCTGATTTCTGGATCATGC 21863
| || |||||||| | ||| || | | | || ||| | |||||| ||||| |||
Sbjct 133 AGAGTCAGGTTTGCCA---CCGCTCCGCCGTTAGGCATATAACGGATTTCAGGATCTTGC 77
Query 21864 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCGCCTG 21922
|| ||| ||| |||| || || ||||||||||||||||| ||||||||| | ||||
Sbjct 76 CCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCTGCTGGCCATTTATTACTCCTG 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124618432966140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |