Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq30817 158 3e-34 >seq30817 Length=4284 Score = 158 bits (174), Expect = 3e-34 Identities = 252/359 (70%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 21567 CCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCC 21626 ||||| | ||||||||| | || |||| || | ||||| || || | | ||| Sbjct 373 CCACCTAACATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCGATCT 314 Query 21627 TGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 21686 || |||||||| ||||||||||| | ||| | || ||||| | ||| || | ||| Sbjct 313 TGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAG 254 Query 21687 CCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGC 21746 |||||| ||| ||||| | |||| ||| || | ||| ||| || ||||| |||||| Sbjct 253 CCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGC 194 Query 21747 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 21806 || || || | || ||| || |||||||| |||||||| ||| || || || Sbjct 193 CATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCC 134 Query 21807 ACTGTAAGGTTTGCAAATGCCGTTC--CTGAT-GGTGAATATCTGATTTCTGGATCATGC 21863 | || |||||||| | ||| || | | | || ||| | |||||| ||||| ||| Sbjct 133 AGAGTCAGGTTTGCCA---CCGCTCCGCCGTTAGGCATATAACGGATTTCAGGATCTTGC 77 Query 21864 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCGCCTG 21922 || ||| ||| |||| || || ||||||||||||||||| ||||||||| | |||| Sbjct 76 CCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCTGCTGGCCATTTATTACTCCTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124618432966140