Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq116239 95.1 1e-14 >seq116239 Length=11340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||||||| |||||||||||||||||||| | ||| |||| || | |||| Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAA-TGTC-CTACCATCCT 4627 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| ||||| || | |||| ||||| || ||||| || | | ||||||||| Sbjct 4628 CCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTT 4687 Query 48636 TAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| || | | | || || || | | ||| ||| | ||| || ||| Sbjct 4688 GAATCTT-TGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTT 4746 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | |||||| |||||||||||||| Sbjct 4747 TTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420566868737294