Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 116 2e-21
>seq30817
Length=4284
Score = 116 bits (128), Expect = 2e-21
Identities = 239/353 (68%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 21047 ATAAGTGGCACAAC-GCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACC 21105
|||| |||| || | | || ||||| ||||| || || || |||| ||| |||||||| |
Sbjct 26 ATAAATGGC-CAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGGCAAGATC 84
Query 21106 CGGAGATCAGGTATATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATG 21165
| || ||| | ||||| || || ||||| ||||| | || || | | ||||| ||
Sbjct 85 CTGAAATCCGTTATATGCCTAACGGCGGAGCGGTGGCAAACCTGACTCTGGCAACTTCTG 144
Query 21166 AATCATGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCG 21225
|| ||||| ||||||||||| || | | || |||| |||||||| || |
Sbjct 145 AAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCGAATGGCACCGTGTGG 204
Query 21226 TTTTGTTCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCT 21285
|| | ||||| ||| | |||||| |||| | || || | |||||| || || ||||
Sbjct 205 TTATTTTCGGCAAATTAGCTGAAGTTGCAGGGGAATACCTGAAAAAAGGCTCACAAGTCT 264
Query 21286 ACATCGAAGGGAAACTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACA 21345
| |||||||| | |||| ||||| ||| || | |||| ||| || || |
Sbjct 265 ATATCGAAGGTTCGTTACAAACACGTAAATGGCAGGACCAAAGCGGTCAAGATCGCTATA 324
Query 21346 CGACGGAAATTATCGTCAGCCAGGGCGGCACCATGCAAATGATCGGCGCTCGC 21398
| || ||| | | || | |||||| | ||||||||| | || | ||||
Sbjct 325 CAACAGAAGTGGTTGTGAATATTGGCGGCTCAATGCAAATGTTAGGTGGTCGC 377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 302742588163374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |