Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq30817 116 2e-21 >seq30817 Length=4284 Score = 116 bits (128), Expect = 2e-21 Identities = 239/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 21047 ATAAGTGGCACAAC-GCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACC 21105 |||| |||| || | | || ||||| ||||| || || || |||| ||| |||||||| | Sbjct 26 ATAAATGGC-CAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGGCAAGATC 84 Query 21106 CGGAGATCAGGTATATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATG 21165 | || ||| | ||||| || || ||||| ||||| | || || | | ||||| || Sbjct 85 CTGAAATCCGTTATATGCCTAACGGCGGAGCGGTGGCAAACCTGACTCTGGCAACTTCTG 144 Query 21166 AATCATGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCG 21225 || ||||| ||||||||||| || | | || |||| |||||||| || | Sbjct 145 AAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCGAATGGCACCGTGTGG 204 Query 21226 TTTTGTTCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCT 21285 || | ||||| ||| | |||||| |||| | || || | |||||| || || |||| Sbjct 205 TTATTTTCGGCAAATTAGCTGAAGTTGCAGGGGAATACCTGAAAAAAGGCTCACAAGTCT 264 Query 21286 ACATCGAAGGGAAACTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACA 21345 | |||||||| | |||| ||||| ||| || | |||| ||| || || | Sbjct 265 ATATCGAAGGTTCGTTACAAACACGTAAATGGCAGGACCAAAGCGGTCAAGATCGCTATA 324 Query 21346 CGACGGAAATTATCGTCAGCCAGGGCGGCACCATGCAAATGATCGGCGCTCGC 21398 | || ||| | | || | |||||| | ||||||||| | || | |||| Sbjct 325 CAACAGAAGTGGTTGTGAATATTGGCGGCTCAATGCAAATGTTAGGTGGTCGC 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302742588163374