Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq21713 230 3e-55 seq32061 161 1e-34 seq1556 95.1 1e-14 >seq21713 Length=22343 Score = 230 bits (254), Expect = 3e-55 Identities = 488/712 (69%), Gaps = 26/712 (4%) Strand=Plus/Plus Query 6705 AGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCAGACtt 6764 |||||| || ||| || ||||||||| ||||| ||||||| || ||| |||| Sbjct 18142 AGGATTGTAGTCTTGCATTTCAAAATCATCAAAAGTAAAATCTTCTATGCATTCA-ACTT 18200 Query 6765 tttttttAATATT-ACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTTTATAG 6823 || ||| ||| | | || ||||| | ||| | ||||| ||||||| | Sbjct 18201 TTCGTTTTATAATGAGCTTTGGAAAAGGTCGTGGCACACGATTCAATTGCTCTTTTAGCG 18260 Query 6824 CTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTT 6883 | ||||||| |||||||| ||||||||| |||| || || | ||| || || || | Sbjct 18261 GCTCAATATGATTTAAATAAACATGAGCATCGCCTAAGGTGTGCACAAAATCTCCAGGCT 18320 Query 6884 TCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAG 6943 | | || ||||| || | || || | || |||||| |||| |||||||| Sbjct 18321 TTAAATTTGTGATGTGAGCTATCATGTAAGTGAGCAAAGCATAACTTGCTATATTAAAAG 18380 Query 6944 GTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTA 7003 | || || | ||||||||||||||||||||||| | ||||| ||||| || || | Sbjct 18381 GCACTCCAAGACCCATATCTGCTGATCTTTGATACAACTGACATGATAA----TTCTCCA 18436 Query 7004 T-AGCA---TAAAATTGACACAATACA-TGACATGGAGGTAAAACAGCCTGATCTATATC 7058 | ||| ||||||||| | || ||| || || ||||||| | | | || || Sbjct 18437 TTAGCCACGTAAAATTGA-ATAAGACAATGGCAAGGAGGTAGTGCCATTTTAGGAATGTC 18495 Query 7059 AGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGT 7118 |||||||||||| ||||| | ||| ||||||||||||||||| || || ||||| | Sbjct 18496 GATTGGATTCCAAGCGGTCATAATAATTCGTCTATCATTTGGATTGGTGTT-AATTTGCT 18554 Query 7119 T-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATAT 7177 || | | | ||||||||| || ||||| || || |||||| | ||||| || ||| Sbjct 18555 CGATGACTTGCTTTAATTGATCAATTCCCTGTCCATCGTAATTACTGTGACATGTTTTAT 18614 Query 7178 AATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCAC 7237 | | || || || || ||||||||||| ||||| | ||| || ||||| || |||| | Sbjct 18615 ATTCTGCCCCTAAGTGCCTCCATTGAAAACCATATACAGGGCCCAAATCGCCAACTTCTC 18674 Query 7238 GATGATTAAATCCTAATCGATTTAAATTAGATTT---TGAT-CCATAAGCATCCCAAATA 7293 ||| | ||||||| |||||| | ||| || || | | || |||||||||| Sbjct 18675 GATCCTCAAATCCT----GATTTATCTAAGAATTCTCTGGTGCTATTTCCATCCCAAATG 18730 Query 7294 TGTACAGAttttt-ttG-ATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAA 7351 || | | ||||| ||| | | || || || ||| || || ||||| | | Sbjct 18731 TGGATATTTTTTTCTTGTAGCAGCTT--AGCATCTGTGCTGCCACGAATAAACCAAAGTA 18788 Query 7352 GTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 ||||||| | | | |||||||||| | | |||||| || ||||| ||||| Sbjct 18789 ATTCTTCTGCAACTGCACGCCAAAAAACACGTTTTGTTGTTAATAATGGGAA 18840 >seq32061 Length=38618 Score = 161 bits (178), Expect = 1e-34 Identities = 228/314 (73%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| | ||||||| | |||||| | || |||||| | ||| || | Sbjct 16329 ATTGGGATTTTGGAAAAATGGGTATTGGTGGATTGGACAAAGAATTCAATGCTATATTTA 16270 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA 164511 |||||||||||||||| || | |||| | | ||| || | | ||||||| ||||| Sbjct 16269 GACGAGCATTTGCTTCACGAGTA-TTCCCACCTGAATTAGTTGAGCAATTAGGATGTAAG 16211 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | ||||| |||||||| |||||||||||| |||||||| |||||||| ||| Sbjct 16210 CATGTTAAAGGTATTTTATTGTTTGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGA 16151 Query 164572 TGCATTGCT-CAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 |||| | ||| | ||||| ||| || ||| |||||||| |||||||| | | Sbjct 16150 CAAATTGGTACAA--TGTTAAATGCTCGTGAACCG--AAAATTGTAAATGGTCCACAGGT 16095 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 || | |||||||| ||||| || ||||||||| | ||| || ||| || || || Sbjct 16094 TTTAGATAAATATGTTGGTGAATCTGAAGCTAATATCAGACGATTATTTGCAGACGCAGA 16035 Query 164688 AGAAGAACAAAAGA 164701 |||||| |||||| Sbjct 16034 GGAAGAAGAAAAGA 16021 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 164785 CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAAT 164844 |||||| |||| || ||||| || ||| ||||||| |||||||| || || |||||| Sbjct 15855 CATGATACAGTTGTAAATCAATTACTTGCTAAAATCGATGGTGTCGAGCAGTTGAATAAT 15796 Query 164845 ATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCT 164904 |||||| || | |||||||| || || ||| | || ||||| ||| | ||||| || Sbjct 15795 ATTTTAGTTATTGGTATGACAAATAGAAGAGATATGATCGATGAAGCTCTCTTACGTCCA 15736 Query 164905 GGTCGATTAGAATTGAAAATAGAAATAGGATTACC 164939 || || |||||| | |||| ||||| || ||||| Sbjct 15735 GGACGTTTAGAAGTACAAATGGAAATTGGTTTACC 15701 >seq1556 Length=77541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 |||| || |||||||||||||| || ||||| || || || || || |||| Sbjct 22611 AAATTGGAGATAAGTTTGCTTCGCGGCATGGACAAAAGGGAACCTGCGGAATCCAATATC 22670 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | ||||||||||||||||||||| || ||| || || ||| |||||||||| |||| Sbjct 22671 GCCAAGAAGATATGCCTTTTACTTGCGAAGGTCTAACTCCTGATATTATTATTAATCCAC 22730 Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503 | ||| ||||| ||| ||||| Sbjct 22731 ACGCTATTCCATCTCGTATGAC 22752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594879172970400