Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 230 3e-55
seq32061 161 1e-34
seq1556 95.1 1e-14
>seq21713
Length=22343
Score = 230 bits (254), Expect = 3e-55
Identities = 488/712 (69%), Gaps = 26/712 (4%)
Strand=Plus/Plus
Query 6705 AGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCAGACtt 6764
|||||| || ||| || ||||||||| ||||| ||||||| || ||| ||||
Sbjct 18142 AGGATTGTAGTCTTGCATTTCAAAATCATCAAAAGTAAAATCTTCTATGCATTCA-ACTT 18200
Query 6765 tttttttAATATT-ACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTTTATAG 6823
|| ||| ||| | | || ||||| | ||| | ||||| ||||||| |
Sbjct 18201 TTCGTTTTATAATGAGCTTTGGAAAAGGTCGTGGCACACGATTCAATTGCTCTTTTAGCG 18260
Query 6824 CTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTT 6883
| ||||||| |||||||| ||||||||| |||| || || | ||| || || || |
Sbjct 18261 GCTCAATATGATTTAAATAAACATGAGCATCGCCTAAGGTGTGCACAAAATCTCCAGGCT 18320
Query 6884 TCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAG 6943
| | || ||||| || | || || | || |||||| |||| ||||||||
Sbjct 18321 TTAAATTTGTGATGTGAGCTATCATGTAAGTGAGCAAAGCATAACTTGCTATATTAAAAG 18380
Query 6944 GTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTA 7003
| || || | ||||||||||||||||||||||| | ||||| ||||| || || |
Sbjct 18381 GCACTCCAAGACCCATATCTGCTGATCTTTGATACAACTGACATGATAA----TTCTCCA 18436
Query 7004 T-AGCA---TAAAATTGACACAATACA-TGACATGGAGGTAAAACAGCCTGATCTATATC 7058
| ||| ||||||||| | || ||| || || ||||||| | | | || ||
Sbjct 18437 TTAGCCACGTAAAATTGA-ATAAGACAATGGCAAGGAGGTAGTGCCATTTTAGGAATGTC 18495
Query 7059 AGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGT 7118
|||||||||||| ||||| | ||| ||||||||||||||||| || || ||||| |
Sbjct 18496 GATTGGATTCCAAGCGGTCATAATAATTCGTCTATCATTTGGATTGGTGTT-AATTTGCT 18554
Query 7119 T-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATAT 7177
|| | | | ||||||||| || ||||| || || |||||| | ||||| || |||
Sbjct 18555 CGATGACTTGCTTTAATTGATCAATTCCCTGTCCATCGTAATTACTGTGACATGTTTTAT 18614
Query 7178 AATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCAC 7237
| | || || || || ||||||||||| ||||| | ||| || ||||| || |||| |
Sbjct 18615 ATTCTGCCCCTAAGTGCCTCCATTGAAAACCATATACAGGGCCCAAATCGCCAACTTCTC 18674
Query 7238 GATGATTAAATCCTAATCGATTTAAATTAGATTT---TGAT-CCATAAGCATCCCAAATA 7293
||| | ||||||| |||||| | ||| || || | | || ||||||||||
Sbjct 18675 GATCCTCAAATCCT----GATTTATCTAAGAATTCTCTGGTGCTATTTCCATCCCAAATG 18730
Query 7294 TGTACAGAttttt-ttG-ATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAA 7351
|| | | ||||| ||| | | || || || ||| || || ||||| | |
Sbjct 18731 TGGATATTTTTTTCTTGTAGCAGCTT--AGCATCTGTGCTGCCACGAATAAACCAAAGTA 18788
Query 7352 GTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403
||||||| | | | |||||||||| | | |||||| || ||||| |||||
Sbjct 18789 ATTCTTCTGCAACTGCACGCCAAAAAACACGTTTTGTTGTTAATAATGGGAA 18840
>seq32061
Length=38618
Score = 161 bits (178), Expect = 1e-34
Identities = 228/314 (73%), Gaps = 10/314 (3%)
Strand=Plus/Minus
Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452
||||| |||||| | ||||||| | |||||| | || |||||| | ||| || |
Sbjct 16329 ATTGGGATTTTGGAAAAATGGGTATTGGTGGATTGGACAAAGAATTCAATGCTATATTTA 16270
Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA 164511
|||||||||||||||| || | |||| | | ||| || | | ||||||| |||||
Sbjct 16269 GACGAGCATTTGCTTCACGAGTA-TTCCCACCTGAATTAGTTGAGCAATTAGGATGTAAG 16211
Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571
||| | ||||| |||||||| |||||||||||| |||||||| |||||||| |||
Sbjct 16210 CATGTTAAAGGTATTTTATTGTTTGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGA 16151
Query 164572 TGCATTGCT-CAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627
|||| | ||| | ||||| ||| || ||| |||||||| |||||||| | |
Sbjct 16150 CAAATTGGTACAA--TGTTAAATGCTCGTGAACCG--AAAATTGTAAATGGTCCACAGGT 16095
Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687
|| | |||||||| ||||| || ||||||||| | ||| || ||| || || ||
Sbjct 16094 TTTAGATAAATATGTTGGTGAATCTGAAGCTAATATCAGACGATTATTTGCAGACGCAGA 16035
Query 164688 AGAAGAACAAAAGA 164701
|||||| ||||||
Sbjct 16034 GGAAGAAGAAAAGA 16021
Score = 109 bits (120), Expect = 7e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 164785 CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAAT 164844
|||||| |||| || ||||| || ||| ||||||| |||||||| || || ||||||
Sbjct 15855 CATGATACAGTTGTAAATCAATTACTTGCTAAAATCGATGGTGTCGAGCAGTTGAATAAT 15796
Query 164845 ATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCT 164904
|||||| || | |||||||| || || ||| | || ||||| ||| | ||||| ||
Sbjct 15795 ATTTTAGTTATTGGTATGACAAATAGAAGAGATATGATCGATGAAGCTCTCTTACGTCCA 15736
Query 164905 GGTCGATTAGAATTGAAAATAGAAATAGGATTACC 164939
|| || |||||| | |||| ||||| || |||||
Sbjct 15735 GGACGTTTAGAAGTACAAATGGAAATTGGTTTACC 15701
>seq1556
Length=77541
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421
|||| || |||||||||||||| || ||||| || || || || || ||||
Sbjct 22611 AAATTGGAGATAAGTTTGCTTCGCGGCATGGACAAAAGGGAACCTGCGGAATCCAATATC 22670
Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481
| ||||||||||||||||||||| || ||| || || ||| |||||||||| ||||
Sbjct 22671 GCCAAGAAGATATGCCTTTTACTTGCGAAGGTCTAACTCCTGATATTATTATTAATCCAC 22730
Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503
| ||| ||||| ||| |||||
Sbjct 22731 ACGCTATTCCATCTCGTATGAC 22752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594879172970400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |