Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005905.1
Length=86462
Score E
Sequences producing significant alignments: (Bits) Value
seq41910 185 5e-42
>seq41910
Length=65838
Score = 185 bits (204), Expect = 5e-42
Identities = 367/528 (70%), Gaps = 19/528 (4%)
Strand=Plus/Minus
Query 3618 ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGT 3677
|||| || ||||||||||||| |||| || || ||||| ||||| ||||||| |
Sbjct 17345 ATGATTTATTATATTTTGCTGATATATGTGCAGGGCCAGGAGGTTTTTCTGAATATGTTC 17286
Query 3678 TATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGATT 3737
| | |||| ||||||| | |||| |||| | || ||| | | |||||||
Sbjct 17285 TTTTTCGAAAAAAATGGACAGCTAGGGGTTTTGGTTTCACTTTAAAGAATGATAATGATT 17226
Query 3738 TTCAACTGAACAGA-TTTTACG-ATAACTTTTCGGAAACTTTACACCCGTATTATGGTCC 3795
|| | || | ||| ||||| | | || ||||| | || | || ||||||||
Sbjct 17225 TTAAGCT-AGGAGACTTTTATGCAGGACCAC-CGGAATCATTTGATCCATATTATGGAG- 17169
Query 3796 GCTTAACG---ATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAA-ATGA 3851
|||||| |||| |||| || || || ||||||| ||| |||| || |||
Sbjct 17168 --TTAACGGTAATGGAGATATTTATGATCCAGAAAATCAAAAATCTTTTGCAGATTATG- 17112
Query 3852 TTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGG 3911
|||||||| | || ||| | || ||||| || | |||||||| || || || || |
Sbjct 17111 TTATGAAACAAACAGAAAGT---GGCGTACACTTCGTAATGGCTGATGGAGGTTTTTCTG 17055
Query 3912 TTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATG-TATTTGTGTCAATGT 3970
|||| || |||||||||| |||||||| | || ||| |||| ||||| || |||||
Sbjct 17054 TTGAAGGAAAAGAAAATATACAAGAAATTCTTTC-AAAGAGATTATATTTATGCCAATGC 16996
Query 3971 TTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATC-AAATTTTTCGATAT 4029
| ||||||| || | || || || |||| | |||| ||||| || ||| |
Sbjct 16995 ATTGTTGCATTATCAATTCTTCGTATAAAAGGACATTTT-TTATGTAAATTATTTGATTT 16937
Query 4030 ATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTG 4089
||||||||||||||||| ||||||| | ||||| ||||||| || |||| | |||||
Sbjct 16936 ATTTACACCTTTTAGTGTTGGTTTAATTTATTTAATGTATAAATGTTTTGAGGAAATTTG 16877
Query 4090 TATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137
|||| |||||| || || || || || ||||| ||| |||||||
Sbjct 16876 CATTTGTAAACCAAATACAAGTCGTCCTGCAAATTCGGAACGATATTT 16829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 276104332972882
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |