Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq41910 185 5e-42 >seq41910 Length=65838 Score = 185 bits (204), Expect = 5e-42 Identities = 367/528 (70%), Gaps = 19/528 (4%) Strand=Plus/Minus Query 3618 ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGT 3677 |||| || ||||||||||||| |||| || || ||||| ||||| ||||||| | Sbjct 17345 ATGATTTATTATATTTTGCTGATATATGTGCAGGGCCAGGAGGTTTTTCTGAATATGTTC 17286 Query 3678 TATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGATT 3737 | | |||| ||||||| | |||| |||| | || ||| | | ||||||| Sbjct 17285 TTTTTCGAAAAAAATGGACAGCTAGGGGTTTTGGTTTCACTTTAAAGAATGATAATGATT 17226 Query 3738 TTCAACTGAACAGA-TTTTACG-ATAACTTTTCGGAAACTTTACACCCGTATTATGGTCC 3795 || | || | ||| ||||| | | || ||||| | || | || |||||||| Sbjct 17225 TTAAGCT-AGGAGACTTTTATGCAGGACCAC-CGGAATCATTTGATCCATATTATGGAG- 17169 Query 3796 GCTTAACG---ATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAA-ATGA 3851 |||||| |||| |||| || || || ||||||| ||| |||| || ||| Sbjct 17168 --TTAACGGTAATGGAGATATTTATGATCCAGAAAATCAAAAATCTTTTGCAGATTATG- 17112 Query 3852 TTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGG 3911 |||||||| | || ||| | || ||||| || | |||||||| || || || || | Sbjct 17111 TTATGAAACAAACAGAAAGT---GGCGTACACTTCGTAATGGCTGATGGAGGTTTTTCTG 17055 Query 3912 TTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATG-TATTTGTGTCAATGT 3970 |||| || |||||||||| |||||||| | || ||| |||| ||||| || ||||| Sbjct 17054 TTGAAGGAAAAGAAAATATACAAGAAATTCTTTC-AAAGAGATTATATTTATGCCAATGC 16996 Query 3971 TTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATC-AAATTTTTCGATAT 4029 | ||||||| || | || || || |||| | |||| ||||| || ||| | Sbjct 16995 ATTGTTGCATTATCAATTCTTCGTATAAAAGGACATTTT-TTATGTAAATTATTTGATTT 16937 Query 4030 ATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTG 4089 ||||||||||||||||| ||||||| | ||||| ||||||| || |||| | ||||| Sbjct 16936 ATTTACACCTTTTAGTGTTGGTTTAATTTATTTAATGTATAAATGTTTTGAGGAAATTTG 16877 Query 4090 TATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 |||| |||||| || || || || || ||||| ||| ||||||| Sbjct 16876 CATTTGTAAACCAAATACAAGTCGTCCTGCAAATTCGGAACGATATTT 16829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276104332972882