Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq37953 111 8e-20
seq117496 109 3e-19
seq92348 109 3e-19
seq13438 109 3e-19
>seq37953
Length=6764
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 4302 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4243
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 4242 CTGAGCTAATGGGCC 4228
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 4599 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4540
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 4539 CTGAGCTAATGGGCC 4525
>seq117496
Length=4511
Score = 109 bits (120), Expect = 3e-19
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 3712 AAAAAA--AAGCTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 3655
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 3654 GCTCTAACCAACTGAGCTAATGGGCC 3629
>seq92348
Length=5269
Score = 109 bits (120), Expect = 3e-19
Identities = 86/103 (83%), Gaps = 7/103 (7%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486
|||||||||| ||||| ||| || |||||||| |||||||||| |||| ||
Sbjct 3019 AAATATAGAA-----AAAAATTCATTTTATGGCCCATGGGGGGATCGAACCCACGACTTT 2965
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2964 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 2922
Score = 109 bits (120), Expect = 3e-19
Identities = 86/103 (83%), Gaps = 7/103 (7%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486
|||||||||| ||||| ||| || |||||||| |||||||||| |||| ||
Sbjct 3242 AAATATAGAA-----AAAAATTCATTTTATGGCCCATGGGGGGATCGAACCCACGACTTT 3188
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3187 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 3145
>seq13438
Length=2320
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1971 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1912
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 1911 TGAGCTAATGGGCC 1898
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261066402152344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |