Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq37953 111 8e-20 seq117496 109 3e-19 seq92348 109 3e-19 seq13438 109 3e-19 >seq37953 Length=6764 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4302 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4243 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 4242 CTGAGCTAATGGGCC 4228 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4599 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4540 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 4539 CTGAGCTAATGGGCC 4525 >seq117496 Length=4511 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 3712 AAAAAA--AAGCTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 3655 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 3654 GCTCTAACCAACTGAGCTAATGGGCC 3629 >seq92348 Length=5269 Score = 109 bits (120), Expect = 3e-19 Identities = 86/103 (83%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||||||||| ||||| ||| || |||||||| |||||||||| |||| || Sbjct 3019 AAATATAGAA-----AAAAATTCATTTTATGGCCCATGGGGGGATCGAACCCACGACTTT 2965 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 2964 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 2922 Score = 109 bits (120), Expect = 3e-19 Identities = 86/103 (83%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||||||||| ||||| ||| || |||||||| |||||||||| |||| || Sbjct 3242 AAATATAGAA-----AAAAATTCATTTTATGGCCCATGGGGGGATCGAACCCACGACTTT 3188 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 3187 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 3145 >seq13438 Length=2320 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1971 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1912 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1911 TGAGCTAATGGGCC 1898 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261066402152344