Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq34035 123 2e-23 seq116239 111 1e-19 >seq34035 Length=19351 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | || | || || |||||||| || || ||||| | ||||||||| Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAG-- 10526 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | |||||| || ||||| || | || ||||| | ||| |||||||||| Sbjct 10525 ATAAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAG 10466 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||||||||| || | || || || || || | | || |||| | | |||| Sbjct 10465 GAATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGA 10406 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 10405 CCTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357 >seq116239 Length=11340 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || ||||||||||| | ||| ||||| || || | ||||||| Sbjct 4570 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCC 4629 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| |||| || || | ||| |||||||| ||||| ||||| ||||| | | Sbjct 4630 AATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGA 4689 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||| || || | | ||||||| | || || || | || || |||||| Sbjct 4690 ATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTT 4749 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||| ||||| |||||||| Sbjct 4750 CCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447544268409840