Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq30817 107 6e-19 >seq30817 Length=4284 Score = 107 bits (118), Expect = 6e-19 Identities = 240/360 (67%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 32900 CCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTC 32959 ||||| | ||||||||| | || | || || | ||||| || || | |||| Sbjct 373 CCACCTAACATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCGATCT 314 Query 32960 TGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 33019 || || ||||||||||||||||| | ||| | || ||||| | ||| || | ||| Sbjct 313 TGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAG 254 Query 33020 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGC 33079 |||||| ||| || || | |||| ||| || | ||| ||| || |||||||||||| Sbjct 253 CCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGC 194 Query 33080 CACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCT 33139 || || || | || ||| || || | || || ||||| ||| || || || Sbjct 193 CATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCC 134 Query 33140 ATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAAC----TTCCGGGTCTTG 33195 | |||||||| || | |||| | | | | | || |||| ||| || ||||| Sbjct 133 AGAGTCAGGTTTGCCACCGCT----CCGCCGTTAGGCATATAACGGATTTCAGGATCTTG 78 Query 33196 TCCAACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCACCTG 33255 || | || | | ||| || ||||||||||||||||| ||||||||| | |||| Sbjct 77 CCCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCTGCTGGCCATTTATTACTCCTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149721035909736