Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 107 6e-19
>seq30817
Length=4284
Score = 107 bits (118), Expect = 6e-19
Identities = 240/360 (67%), Gaps = 8/360 (2%)
Strand=Plus/Minus
Query 32900 CCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTC 32959
||||| | ||||||||| | || | || || | ||||| || || | ||||
Sbjct 373 CCACCTAACATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCGATCT 314
Query 32960 TGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAG 33019
|| || ||||||||||||||||| | ||| | || ||||| | ||| || | |||
Sbjct 313 TGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAG 254
Query 33020 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGC 33079
|||||| ||| || || | |||| ||| || | ||| ||| || ||||||||||||
Sbjct 253 CCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGC 194
Query 33080 CACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCT 33139
|| || || | || ||| || || | || || ||||| ||| || || ||
Sbjct 193 CATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCC 134
Query 33140 ATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAAC----TTCCGGGTCTTG 33195
| |||||||| || | |||| | | | | | || |||| ||| || |||||
Sbjct 133 AGAGTCAGGTTTGCCACCGCT----CCGCCGTTAGGCATATAACGGATTTCAGGATCTTG 78
Query 33196 TCCAACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCACCTG 33255
|| | || | | ||| || ||||||||||||||||| ||||||||| | ||||
Sbjct 77 CCCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCTGCTGGCCATTTATTACTCCTG 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149721035909736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |