Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq50502 178 1e-39 seq3775 102 9e-17 >seq50502 Length=11567 Score = 178 bits (196), Expect = 1e-39 Identities = 200/266 (75%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 21457 TAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAA 21516 ||| || || ||||| |||||||||||||||||||| | |||||||| | ||||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 21517 TTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGC 21576 |||||| |||||||||||||| ||||||| ||||| ||||||||||||||||| | || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 21577 AAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTA 21636 ||| ||| ||||||||| || ||||| |||||||| |||| | || ||||||| | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 21637 TGTAGATTCTTTA--TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAA 21694 ||| |||| | || |||||| | ||||| | || |||| ||||| ||| Sbjct 4937 ATTAGCAGATTTACTTGCA--ATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACAC 4994 Query 21695 TCAATTGTATCAATAGCTTTTAAAAG 21720 | ||| |||||||| || ||||| Sbjct 4995 GGTAATGTTTCAATAGCATTGAAAAG 5020 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 || |||||||| ||||| | |||||| || || || ||||| || |||||||| | ||| Sbjct 5140 CTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCT 5199 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | | ||| || || | |||||||| | | | ||||||||||| || |||||| Sbjct 5200 TCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGATTTTCATTTACAATACCATCA 5259 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 ||| ||||||||||| || | || | ||||||| ||||| | ||||||||| Sbjct 5260 GAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGACGTTCTCCACTAGTTAATTTT 5319 Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | ||| | | ||||||||||||||| ||||||||| ||||||||| Sbjct 5320 TCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCAACTGTCCAAAA 5369 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||||| || ||||| ||| || ||||| | | |||||||| Sbjct 4152 TTTAAAAATCTGCATCTAATGTAAAGACATTGTCTGTTTGATTTGATGTTACTCCCATTT 4211 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||| | ||||| ||||| ||||| || || || | || ||| | Sbjct 4212 TTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGT 4271 Query 21246 CCATAAAATCAAATGGATTTTCAGATTT 21273 |||||||| ||| |||||||| || || Sbjct 4272 CCATAAAACTAAAAGGATTTTCTGAATT 4299 >seq3775 Length=22988 Score = 102 bits (112), Expect = 9e-17 Identities = 175/246 (71%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 132379 TATTAAAAA-AGGGTTTGAAGGAATTATGATTAAAGGGGTTAATGACGAATACAAACCTG 132437 |||||||| ||| || |||||| | | | ||| |||| | |||| |||| | Sbjct 6733 TATTAAAAGCAGGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAG 6674 Query 132438 GAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTAT-TTAGAGAATGGGTCTATGGCAGAT 132496 |||||||||||||||| || || || ||||||||| || ||| || ||||||||| Sbjct 6673 GAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAA-GGACAAATGGCAGAT 6615 Query 132497 TCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGGAGGAATACAA 132556 | || ||| | || || ||||| | | ||||| | ||| ||| || || || | Sbjct 6614 ACTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTA 6555 Query 132557 TCAATATTTTTAATGGGATGTTATGATTC-AGATCGTATGATTTGGAAGACTGTAACAAA 132615 ||||| |||||||||||||||||||| | | | || || ||||| || |||||||| Sbjct 6554 AGTATATTCTTAATGGGATGTTATGATTCTAAAACAAAT-ATATGGAAAACAGTAACAAA 6496 Query 132616 ATGTTC 132621 | |||| Sbjct 6495 A-GTTC 6491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531014560184560