Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 178 1e-39
seq3775 102 9e-17
>seq50502
Length=11567
Score = 178 bits (196), Expect = 1e-39
Identities = 200/266 (75%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 21457 TAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAA 21516
||| || || ||||| |||||||||||||||||||| | |||||||| | |||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 21517 TTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGC 21576
|||||| |||||||||||||| ||||||| ||||| ||||||||||||||||| | ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 21577 AAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTA 21636
||| ||| ||||||||| || ||||| |||||||| |||| | || ||||||| |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 21637 TGTAGATTCTTTA--TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAA 21694
||| |||| | || |||||| | ||||| | || |||| ||||| |||
Sbjct 4937 ATTAGCAGATTTACTTGCA--ATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACAC 4994
Query 21695 TCAATTGTATCAATAGCTTTTAAAAG 21720
| ||| |||||||| || |||||
Sbjct 4995 GGTAATGTTTCAATAGCATTGAAAAG 5020
Score = 145 bits (160), Expect = 8e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
|| |||||||| ||||| | |||||| || || || ||||| || |||||||| | |||
Sbjct 5140 CTGTACATTTCTGAATGAACATTTTCAATTGCAATTTGAAAGCCATAAAAACAACGTGCT 5199
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|| | | ||| || || | |||||||| | | | ||||||||||| || ||||||
Sbjct 5200 TCAGTAATTTGTACTTCTTGACCAAATCGTTCAACAAGATTTTCATTTACAATACCATCA 5259
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
||| ||||||||||| || | || | ||||||| ||||| | |||||||||
Sbjct 5260 GAGGCTGCAAAAAATGCTAAAACATGTGAAATAAAATGACGTTCTCCACTAGTTAATTTT 5319
Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996
| ||| | | ||||||||||||||| ||||||||| |||||||||
Sbjct 5320 TCCCAGTGAGCCATATCTTTTGATAAATCAACTTCTTCAACTGTCCAAAA 5369
Score = 114 bits (126), Expect = 1e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||||| || ||||| ||| || ||||| | | ||||||||
Sbjct 4152 TTTAAAAATCTGCATCTAATGTAAAGACATTGTCTGTTTGATTTGATGTTACTCCCATTT 4211
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||||| |||| |||| | ||||| ||||| ||||| || || || | || ||| |
Sbjct 4212 TTTGATACTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTACCATCAAGAGAAATAAGGT 4271
Query 21246 CCATAAAATCAAATGGATTTTCAGATTT 21273
|||||||| ||| |||||||| || ||
Sbjct 4272 CCATAAAACTAAAAGGATTTTCTGAATT 4299
>seq3775
Length=22988
Score = 102 bits (112), Expect = 9e-17
Identities = 175/246 (71%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 132379 TATTAAAAA-AGGGTTTGAAGGAATTATGATTAAAGGGGTTAATGACGAATACAAACCTG 132437
|||||||| ||| || |||||| | | | ||| |||| | |||| |||| |
Sbjct 6733 TATTAAAAGCAGGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAG 6674
Query 132438 GAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTAT-TTAGAGAATGGGTCTATGGCAGAT 132496
|||||||||||||||| || || || ||||||||| || ||| || |||||||||
Sbjct 6673 GAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAA-GGACAAATGGCAGAT 6615
Query 132497 TCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGGAGGAATACAA 132556
| || ||| | || || ||||| | | ||||| | ||| ||| || || || |
Sbjct 6614 ACTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTA 6555
Query 132557 TCAATATTTTTAATGGGATGTTATGATTC-AGATCGTATGATTTGGAAGACTGTAACAAA 132615
||||| |||||||||||||||||||| | | | || || ||||| || ||||||||
Sbjct 6554 AGTATATTCTTAATGGGATGTTATGATTCTAAAACAAAT-ATATGGAAAACAGTAACAAA 6496
Query 132616 ATGTTC 132621
| ||||
Sbjct 6495 A-GTTC 6491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531014560184560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |