Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 688 0.0
seq50502 188 9e-43
seq3775 91.5 2e-13
>seq69808
Length=9325
Score = 688 bits (762), Expect = 0.0
Identities = 1276/1852 (69%), Gaps = 34/1852 (2%)
Strand=Plus/Minus
Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075
|| ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| ||||||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135
||||| |||||| |||| | || || |||| ||| ||||| | ||||||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTT 62193
||||| ||||| || || | ||||||||||||| || | || |||| || |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 62194 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 62249
|||||| |||||||| || || | || | || ||| | || | |||| | ||
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013
Query 62250 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309
|| |||| || ||| || || |||| || || ||||||| |||||| | || |||
Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953
Query 62310 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62368
||| || | || ||| | ||||||||| |||||| ||||| ||||| | |||
Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894
Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428
|| ||||| ||||| || || | || || ||||| || |||||||| || |||||
Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834
Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488
||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| ||
Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774
Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62548
||| || | ||||||||| ||||| | ||| ||| ||
Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714
Query 62549 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608
||||| | || | ||||| ||||||| || |||| || | |||||||
Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654
Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62668
||| ||||| |||||||||||||| |||||||| ||||| || || | | ||||| |
Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594
Query 62669 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTG 62728
|||||||| || ||| |||| ||| | | |||||| || || ||||| |||||
Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534
Query 62729 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62788
|| |||||||| || |||| ||| | ||| || ||| |||||||| | ||||||
Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474
Query 62789 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62845
|||||||||||| ||||||||||| | ||||| | |||||| |||| || || ||
Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417
Query 62846 CAGTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAAGGCAACAGATGC 62902
||||| ||||||| || || || | |||||||| || || |||| || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 62903 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62962
| ||||||||| |||| |||| | | | ||||| | || || || || |||||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297
Query 62963 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63022
|||||| || || || || | |||||||||||||| ||| ||||||||||| |||||
Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237
Query 63023 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63082
| || |||||||||||||||||| |||||||| || || || ||| | ||
Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177
Query 63083 AGCCTTTATT-ATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 63141
|| || ||| | ||| | | | | ||| |||| ||| |||| | | | || |
Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118
Query 63142 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 63201
| | || ||||| ||||| || |||||||||| || |||||||| || ||||| |
Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058
Query 63202 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63261
| ||| | | || ||||||||||| | ||| |||||||| | || ||||| ||
Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998
Query 63262 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63321
| || | | |||||| || |||| ||||| ||||| | || | || | | |||||
Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938
Query 63322 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63381
| | |||||| ||||| || || || || | | || || ||||| || || || ||||
Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878
Query 63382 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63441
| | |||||||| |||||| | || | |||||||| | | ||| ||||||||||
Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818
Query 63442 CATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCT 63497
|||| || || | || | | || | | ||| || || ||| ||| || ||
Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762
Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557
|| || || || |||| || || | ||||||| ||| | | | | | ||||| ||
Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702
Query 63558 ATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616
|| |||||| | || |||||| || |||||| || | ||| |||||| ||| |
Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643
Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676
||| |||||| || || || || || ||||| | ||| || | ||||| || ||
Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583
Query 63677 CTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735
|||||| | | || ||| | || | || || || ||||| |||||||||||||| |
Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524
Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795
| || ||||||||| | || || || ||||| ||||| || ||| |||| || ||||
Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464
Query 63796 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847
||||||||||||| || || ||| || || || |||||||| |||| ||
Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412
>seq50502
Length=11567
Score = 188 bits (208), Expect = 9e-43
Identities = 205/272 (75%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||| | ||| || || || |||| || |||||||| ||||||| |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| ||||| || || ||||| | || || ||||| ||||||||| || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743
| | ||||||||| || || || ||| |||||||||||| || || |||||| ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803
||||| ||| | |||| ||| | ||| | | |||||||| |||| ||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 33804 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|||||| ||||||||||||||||| || ||||
Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 136 bits (150), Expect = 5e-27
Identities = 191/264 (72%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 33285 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 33344
|||||| || ||||| |||||||| ||||| || || || || || || | |||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 33345 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33404
||| || ||||| || | || ||||||| || || ||||| | ||||||||| | ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 33405 GAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA 33464
|| |||| |||||| |||||||| || |||||||| ||||||| ||| || || |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 33465 ACCGGC-GCTGT-CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521
| || | | | | || | |||| | |||||||||||| || ||||| ||||| ||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 33522 CATCGTTTCTATGGCATTAAAGAG 33545
| ||||| || ||||| || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020
>seq3775
Length=22988
Score = 91.5 bits (100), Expect = 2e-13
Identities = 175/252 (69%), Gaps = 7/252 (3%)
Strand=Plus/Minus
Query 157082 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 157141
|||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | ||
Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661
Query 157142 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 157201
||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| ||
Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601
Query 157202 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCT-TTC-TA 157259
|| |||| || | ||||||| ||| ||| ||||| || | ||| | ||| ||
Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543
Query 157260 ATGGGTTGTTACGACGATGAATCCGGTAAATGGAAGACGGTTAC-CAAGT--GTTCAGGA 157316
||||| ||||| || | || | || |||||| || || || |||| ||||||
Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAGTTCATTCAGGT 6483
Query 157317 CACGATGATAAT 157328
|||||||||
Sbjct 6482 TTAGATGATAAT 6471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621909260949040
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