Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq69808 141 9e-29 seq116239 93.3 4e-14 seq98857 87.8 2e-12 >seq69808 Length=9325 Score = 141 bits (156), Expect = 9e-29 Identities = 462/701 (66%), Gaps = 24/701 (3%) Strand=Plus/Minus Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 ||| | ||||| || || ||||| ||||||| ||| ||||| || | ||| || ||||| Sbjct 7880 GTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATT 7821 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626 ||||| || || ||||| || | || || |||| | ||||| || | | Sbjct 7820 GGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTC 7761 Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 || ||||| |||||| | | | ||| ||||||||| |||| | || | | || Sbjct 7760 CAATTCCATAGATCAGTTGGT--GTTT-TATTCCACATATCATATTGAAGTATACCTTGG 7704 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746 || | || |||||| || | || |||| || | | || ||||| |||| ||| Sbjct 7703 CTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTA 7644 Query 147747 TGACT-TAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTA-GCCT 147804 | || || ||||||||||||||| ||||| | || | || |||||| | ||| || | Sbjct 7643 -GCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATT-TCTGTGCTT 7586 Query 147805 CTTGGCTGTCGTAGGGCATATCCA---AAATGGCGAACGTATCCGCAAGTCCTTGAATAC 147861 ||| || || || || | || |||| || | ||| || | ||||| | | Sbjct 7585 CTTCACTTTCATATGGGTAACGCATTAAAATA---AATGCATCAGCTAAGCCTTGTACGC 7529 Query 147862 CGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAAT 147921 | ||||| || ||||| || | ||||| ||| || || | || |||||| ||| Sbjct 7528 CAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAAT 7469 Query 147922 TCAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACT 147981 | | || ||||||||||| | ||| | ||||| | | | | || | | || | Sbjct 7468 TAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTT 7409 Query 147982 TAAAGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGT 148041 |||| || | |||| | ||| | | |||| |||||| ||||| || || || | Sbjct 7408 TAAAATC-ATATTTTTTATCTGCT--GTAACAAACATATTTAAAGCAATTGAAGCTAAAT 7352 Query 148042 TACACACGGCCGTTTC-TCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATTGC 148098 |||| || || |||| || || ||| ||||| ||| ||||| | ||||||||| | Sbjct 7351 TACAAACAGCTATTTCATC---TGGTGCTGAATATTCAACAATTTCTGTACACAGATTAC 7295 Query 148099 TGTTTCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAAC 148157 | | ||| || ||||| ||||||| |||| ||| ||| ||||||| | Sbjct 7294 TACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACG-CATCTTTATAT 7236 Query 148158 ATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAAT 148198 | ||| ||||||| || || || ||||||| ||||| || Sbjct 7235 AACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTAT 7195 >seq116239 Length=11340 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | ||||||||||| |||||||||||| | || || | || | || | Sbjct 4782 CAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCC 4723 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| || || | || ||| ||||||| ||||| ||||| || || || || Sbjct 4722 GTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGA 4663 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | | |||| | || || ||| | || |||| ||| | | || || Sbjct 4662 TCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTA 4603 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||| ||||| || | ||| |||| || Sbjct 4602 CAACATTCAAAAGGAATCCACACTTCATTTGGTTCT 4567 >seq98857 Length=3708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 26787 ACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTC 26846 ||||||||||||||| | |||||| |||| | ||| || ||| || || || | || Sbjct 160 ACATTAACTGGAAAAACAATCACCCTCGAGGTTGAACCATCCGATACAATTGAAAATGTT 101 Query 26847 AAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGC 26906 || |||||| ||||| || || || ||||| |||||||||||| | || | || Sbjct 100 AAGGCAAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAACAAAGATTAATCTTCGAA 41 Query 26907 GGCAAACAACTCGAAGAT 26924 || ||||||||| ||||| Sbjct 40 GGAAAACAACTCTAAGAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477864864675680