Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 141 9e-29
seq116239 93.3 4e-14
seq98857 87.8 2e-12
>seq69808
Length=9325
Score = 141 bits (156), Expect = 9e-29
Identities = 462/701 (66%), Gaps = 24/701 (3%)
Strand=Plus/Minus
Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566
||| | ||||| || || ||||| ||||||| ||| ||||| || | ||| || |||||
Sbjct 7880 GTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATT 7821
Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626
||||| || || ||||| || | || || |||| | ||||| || | |
Sbjct 7820 GGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTC 7761
Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686
|| ||||| |||||| | | | ||| ||||||||| |||| | || | | ||
Sbjct 7760 CAATTCCATAGATCAGTTGGT--GTTT-TATTCCACATATCATATTGAAGTATACCTTGG 7704
Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746
|| | || |||||| || | || |||| || | | || ||||| |||| |||
Sbjct 7703 CTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTA 7644
Query 147747 TGACT-TAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTA-GCCT 147804
| || || ||||||||||||||| ||||| | || | || |||||| | ||| || |
Sbjct 7643 -GCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATT-TCTGTGCTT 7586
Query 147805 CTTGGCTGTCGTAGGGCATATCCA---AAATGGCGAACGTATCCGCAAGTCCTTGAATAC 147861
||| || || || || | || |||| || | ||| || | ||||| | |
Sbjct 7585 CTTCACTTTCATATGGGTAACGCATTAAAATA---AATGCATCAGCTAAGCCTTGTACGC 7529
Query 147862 CGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAAT 147921
| ||||| || ||||| || | ||||| ||| || || | || |||||| |||
Sbjct 7528 CAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAAT 7469
Query 147922 TCAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACT 147981
| | || ||||||||||| | ||| | ||||| | | | | || | | || |
Sbjct 7468 TAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTT 7409
Query 147982 TAAAGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGT 148041
|||| || | |||| | ||| | | |||| |||||| ||||| || || || |
Sbjct 7408 TAAAATC-ATATTTTTTATCTGCT--GTAACAAACATATTTAAAGCAATTGAAGCTAAAT 7352
Query 148042 TACACACGGCCGTTTC-TCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATTGC 148098
|||| || || |||| || || ||| ||||| ||| ||||| | ||||||||| |
Sbjct 7351 TACAAACAGCTATTTCATC---TGGTGCTGAATATTCAACAATTTCTGTACACAGATTAC 7295
Query 148099 TGTTTCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAAC 148157
| | ||| || ||||| ||||||| |||| ||| ||| ||||||| |
Sbjct 7294 TACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACG-CATCTTTATAT 7236
Query 148158 ATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAAT 148198
| ||| ||||||| || || || ||||||| ||||| ||
Sbjct 7235 AACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTAT 7195
>seq116239
Length=11340
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||||||||| | ||||||||||| |||||||||||| | || || | || | || |
Sbjct 4782 CAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCC 4723
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
||||| || || | || ||| ||||||| ||||| ||||| || || || ||
Sbjct 4722 GTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGA 4663
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
||||||| | | |||| | || || ||| | || |||| ||| | | || ||
Sbjct 4662 TCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTA 4603
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||||||||| ||||| || | ||| |||| ||
Sbjct 4602 CAACATTCAAAAGGAATCCACACTTCATTTGGTTCT 4567
>seq98857
Length=3708
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 26787 ACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTC 26846
||||||||||||||| | |||||| |||| | ||| || ||| || || || | ||
Sbjct 160 ACATTAACTGGAAAAACAATCACCCTCGAGGTTGAACCATCCGATACAATTGAAAATGTT 101
Query 26847 AAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGC 26906
|| |||||| ||||| || || || ||||| |||||||||||| | || | ||
Sbjct 100 AAGGCAAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAACAAAGATTAATCTTCGAA 41
Query 26907 GGCAAACAACTCGAAGAT 26924
|| ||||||||| |||||
Sbjct 40 GGAAAACAACTCTAAGAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477864864675680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |