Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq69808 246 8e-60 seq21713 230 6e-55 seq50502 125 2e-23 seq84576 91.5 4e-13 >seq69808 Length=9325 Score = 246 bits (272), Expect = 8e-60 Identities = 704/1073 (66%), Gaps = 21/1073 (2%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || |||||| | |||| |||| | || || |||||||||||||||||||| ||||||| Sbjct 6493 ATTAATGGTAAAATTGCTGAAAGACCACAACATATGTTAATGCGTGTTGCAGTTGGTATA 6552 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 || | || ||||||| | |||||||| ||||| ||| || | ||| || Sbjct 6553 CACGGTGATAATATTGATGCTGTTATTGAAACTTATAATCTTTTATCAGAACGTTATTTT 6612 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || || | |||||| | | ||| | ||| ||| ||| || | || || || Sbjct 6613 ACTCATGCATCACCAACATTATTTGCTGCAGCAACACGTCGTCCTCAATTATCATCATGT 6672 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 ||| | ||| |||| || ||||| || || ||||| ||| | || || | | || Sbjct 6673 TTTTTATTAACAATGGTTGATGATTCAATTGAAGGTATATTTAAATCAATTGAACAATGC 6732 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCAC 363727 || | || || || ||||| || || ||||| || || ||| || | ||| || Sbjct 6733 GCAATGATATCAAAAAATGCTGGTGGTATTGGAATAA--ATGTACATTGCATACGTTCAA 6790 Query 363728 AGAACAGTTACAT---TCGC-GGCACAGGGGG-ATACTCGAATGGGCTGGTTCCCATGCT 363782 | || ||||| | || |||||| || ||| || ||||| | || || ||| | Sbjct 6791 A----AGGTACATCAATTGCTGGCACAAATGGTATA-TCAAATGGTTTAGTACCAATGTT 6845 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 ||||| ||| | ||| ||| || || || || || ||||| || || ||| || Sbjct 6846 ACGTGTCTTTAATAATGTTGCTAGATATGTTGATCAAGGTGGTAATAAACGACCAGGTGC 6905 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 |||||||| ||| | || || ||||| ||||||||||| ||| | | | || Sbjct 6906 ATTTGCTATTTATTTAGAACCATGGCATGCAGATATTTTTGAATTTTTAAATTTAAAAAA 6965 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||| || |||| ||| ||| ||||| | ||| | || |||||| | ||| || | || Sbjct 6966 AAATACTGGAACAGAAGAACATCGTGCTAGGGATTTATTTTATGCAATGTGGATTCCAGA 7025 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 |||||||| || || || || | | | ||||||||| | | || ||||| |||| Sbjct 7026 TTTATTTATGAAACGTGTTGAAGCTGATGATAATTGGTCATTAATGTGTCCACATAAATG 7085 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT--GCTCTATACGAAAAGTATGAA 364080 ||| ||| | | ||||||||||||| | | || | || |||| ||| |||||| Sbjct 7086 TCCTGGTTTATTTAATGTATGGGGTGAAAAATTTGATCAACTTTATATTAAA--TATGAA 7143 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 || || ||| ||| |||||| |||| |||||||||| || || || Sbjct 7144 AATGAAGGTCGTGCTAATAAAACAATTAAAGCACGTTCATTATGGTTTGCTATAATTGAA 7203 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 || || |||| || || || || |||||||| || |||||| |||| || || || Sbjct 7204 TCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAATCGAAAAAGT 7263 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 || || || || |||| || ||| | || || || ||||| || ||| ||||||| Sbjct 7264 AATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAATTGTTGAATAT 7323 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 | || || || || | || || ||||| | || || || || | |||||| Sbjct 7324 TCAGCACCAGATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTTAAATATGTTTGTT 7383 Query 364320 --AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC 364377 | |||| | | ||| | | ||| | || || || | || ||| | Sbjct 7384 ACAGCAGATAAAAAATATGATTTTAAAAAACTTAAAGAAGTTACAAAAATTGTTACAAGA 7443 Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAAT 364437 ||| | | || |||| || | ||||||||||| | || ||||| | || ||| Sbjct 7444 AATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGAAGCAAAAAAATCAAAT 7503 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 | |||||||| || |||||| |||| ||||| ||| | ||||| | ||||| Sbjct 7504 TTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGATGCATTTAT 7556 >seq21713 Length=22343 Score = 230 bits (254), Expect = 6e-55 Identities = 470/684 (69%), Gaps = 22/684 (3%) Strand=Plus/Minus Query 111244 GAAGTGACAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATC 111303 ||| ||| |||| || ||| |||||| || ||||||| | |||| | ||||||| Sbjct 18911 GAAATGATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATC 18852 Query 111304 TGTCAACTC-AT---TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTC 111359 | || | || || ||| | | |||||||| || | |||| | | ||| Sbjct 18851 T----ACGCGATAGCTTCCCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCA 18796 Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419 |||||| | || ||||||||||| || || ||| |||| || || || ||||||| Sbjct 18795 GAAGAATTACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAAT 18736 Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGAC 111479 | | ||||||||||||||| | | | || || ||||| | || ||| || Sbjct 18735 ATCCACATTTGGGATGGAAATAGCACCAGAGAATTCTTAGATAAATCAGGATTTGAGGAT 18676 Query 111480 AACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGAC 111539 |||| || ||| | || || || || || ||||||||| | ||||| || ||||| Sbjct 18675 CGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAA 18616 Query 111540 TACAAAACCATG-CACGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCA 111597 || |||| |||| ||| | | | || ||| |||||||| |||||||||| || | |||| Sbjct 18615 TATAAAA-CATGTCAC-AGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCA 18558 Query 111598 TTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAA 111657 | || |||||||| | ||| |||| | | | || |||||||||| || ||||| |||| Sbjct 18557 TCGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAA 18498 Query 111658 ATG-CATTGGAAAAAATGGCACTTCCACCATGTCA---TCTTATGTGCCAGTTTTATGTA 111713 | |||| ||||||||||| || || || || |||||| || ||||| || Sbjct 18497 TCGACATT-CCTAAAATGGCACTACCTCCTTGCCATTGTCTTAT---TCAATTTTACGT- 18443 Query 111714 CACGACGGGATGCTT-TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGT 111772 | | ||| || ||||| || ||||||| |||| || ||||| |||||||| || Sbjct 18442 GGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGT 18383 Query 111773 TCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCT 111832 || |||||||| |||||||| || | || |||| | | || ||||| | |||||| | Sbjct 18382 GCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAATTT 18323 Query 111833 CAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892 || || || || || | ||| | || ||||| |||||||| ||| || ||||| Sbjct 18322 AAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGA 18263 Query 111893 TGCACTTAAAACACAGTTGAAGCG 111916 | || ||| || ||||| || Sbjct 18262 GCCGCTAAAAGAGCAATTGAATCG 18239 >seq50502 Length=11567 Score = 125 bits (138), Expect = 2e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 |||| ||| | ||||||| ||||||| |||||||| ||||||||| |||| ||| Sbjct 4936 TTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGGAATTTTCTTTAGTGGAAGTTTT 4877 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 || || |||||| |||||||||| | ||| ||||| ||| |||| ||||||||||| Sbjct 4876 GCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCCTGGTTTAACATTTTCAAATGAA 4817 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||| || ||||| || |||||| |||||||| ||| Sbjct 4816 TTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGCATGT 4775 >seq84576 Length=9936 Score = 91.5 bits (100), Expect = 4e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 12829 CCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACA 12888 |||||||| | | ||||||||||||||||||||| ||||| |||| | | ||| || Sbjct 2603 CCAAATGTTAATGCATCCATGTCTTCAGTTGCTGTAGCATAAACTTTACTAGCTTTAACT 2544 Query 12889 TATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTA 12946 | ||||||||| ||||| || ||||||||||||| |||| || | ||||||| Sbjct 2543 AAAGCAGCACATTGTGCTTCAGCTTCACATGGTGCTTCAACGTATGGTACACCCATTA 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301127694435908