Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 246 8e-60
seq21713 230 6e-55
seq50502 125 2e-23
seq84576 91.5 4e-13
>seq69808
Length=9325
Score = 246 bits (272), Expect = 8e-60
Identities = 704/1073 (66%), Gaps = 21/1073 (2%)
Strand=Plus/Plus
Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489
|| |||||| | |||| |||| | || || |||||||||||||||||||| |||||||
Sbjct 6493 ATTAATGGTAAAATTGCTGAAAGACCACAACATATGTTAATGCGTGTTGCAGTTGGTATA 6552
Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549
|| | || ||||||| | |||||||| ||||| ||| || | ||| ||
Sbjct 6553 CACGGTGATAATATTGATGCTGTTATTGAAACTTATAATCTTTTATCAGAACGTTATTTT 6612
Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609
|| || || | |||||| | | ||| | ||| ||| ||| || | || || ||
Sbjct 6613 ACTCATGCATCACCAACATTATTTGCTGCAGCAACACGTCGTCCTCAATTATCATCATGT 6672
Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669
||| | ||| |||| || ||||| || || ||||| ||| | || || | | ||
Sbjct 6673 TTTTTATTAACAATGGTTGATGATTCAATTGAAGGTATATTTAAATCAATTGAACAATGC 6732
Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCAC 363727
|| | || || || ||||| || || ||||| || || ||| || | ||| ||
Sbjct 6733 GCAATGATATCAAAAAATGCTGGTGGTATTGGAATAA--ATGTACATTGCATACGTTCAA 6790
Query 363728 AGAACAGTTACAT---TCGC-GGCACAGGGGG-ATACTCGAATGGGCTGGTTCCCATGCT 363782
| || ||||| | || |||||| || ||| || ||||| | || || ||| |
Sbjct 6791 A----AGGTACATCAATTGCTGGCACAAATGGTATA-TCAAATGGTTTAGTACCAATGTT 6845
Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842
||||| ||| | ||| ||| || || || || || ||||| || || ||| ||
Sbjct 6846 ACGTGTCTTTAATAATGTTGCTAGATATGTTGATCAAGGTGGTAATAAACGACCAGGTGC 6905
Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902
|||||||| ||| | || || ||||| ||||||||||| ||| | | | ||
Sbjct 6906 ATTTGCTATTTATTTAGAACCATGGCATGCAGATATTTTTGAATTTTTAAATTTAAAAAA 6965
Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962
||| || |||| ||| ||| ||||| | ||| | || |||||| | ||| || | ||
Sbjct 6966 AAATACTGGAACAGAAGAACATCGTGCTAGGGATTTATTTTATGCAATGTGGATTCCAGA 7025
Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022
|||||||| || || || || | | | ||||||||| | | || ||||| ||||
Sbjct 7026 TTTATTTATGAAACGTGTTGAAGCTGATGATAATTGGTCATTAATGTGTCCACATAAATG 7085
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT--GCTCTATACGAAAAGTATGAA 364080
||| ||| | | ||||||||||||| | | || | || |||| ||| ||||||
Sbjct 7086 TCCTGGTTTATTTAATGTATGGGGTGAAAAATTTGATCAACTTTATATTAAA--TATGAA 7143
Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140
|| || ||| ||| |||||| |||| |||||||||| || || ||
Sbjct 7144 AATGAAGGTCGTGCTAATAAAACAATTAAAGCACGTTCATTATGGTTTGCTATAATTGAA 7203
Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200
|| || |||| || || || || |||||||| || |||||| |||| || || ||
Sbjct 7204 TCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAATCGAAAAAGT 7263
Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260
|| || || || |||| || ||| | || || || ||||| || ||| |||||||
Sbjct 7264 AATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAATTGTTGAATAT 7323
Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319
| || || || || | || || ||||| | || || || || | ||||||
Sbjct 7324 TCAGCACCAGATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTTAAATATGTTTGTT 7383
Query 364320 --AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC 364377
| |||| | | ||| | | ||| | || || || | || ||| |
Sbjct 7384 ACAGCAGATAAAAAATATGATTTTAAAAAACTTAAAGAAGTTACAAAAATTGTTACAAGA 7443
Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAAT 364437
||| | | || |||| || | ||||||||||| | || ||||| | || |||
Sbjct 7444 AATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGAAGCAAAAAAATCAAAT 7503
Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490
| |||||||| || |||||| |||| ||||| ||| | ||||| | |||||
Sbjct 7504 TTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGATGCATTTAT 7556
>seq21713
Length=22343
Score = 230 bits (254), Expect = 6e-55
Identities = 470/684 (69%), Gaps = 22/684 (3%)
Strand=Plus/Minus
Query 111244 GAAGTGACAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATC 111303
||| ||| |||| || ||| |||||| || ||||||| | |||| | |||||||
Sbjct 18911 GAAATGATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATC 18852
Query 111304 TGTCAACTC-AT---TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTC 111359
| || | || || ||| | | |||||||| || | |||| | | |||
Sbjct 18851 T----ACGCGATAGCTTCCCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCA 18796
Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419
|||||| | || ||||||||||| || || ||| |||| || || || |||||||
Sbjct 18795 GAAGAATTACTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAAT 18736
Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGAC 111479
| | ||||||||||||||| | | | || || ||||| | || ||| ||
Sbjct 18735 ATCCACATTTGGGATGGAAATAGCACCAGAGAATTCTTAGATAAATCAGGATTTGAGGAT 18676
Query 111480 AACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGAC 111539
|||| || ||| | || || || || || ||||||||| | ||||| || |||||
Sbjct 18675 CGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAA 18616
Query 111540 TACAAAACCATG-CACGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCA 111597
|| |||| |||| ||| | | | || ||| |||||||| |||||||||| || | ||||
Sbjct 18615 TATAAAA-CATGTCAC-AGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCA 18558
Query 111598 TTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAA 111657
| || |||||||| | ||| |||| | | | || |||||||||| || ||||| ||||
Sbjct 18557 TCGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAA 18498
Query 111658 ATG-CATTGGAAAAAATGGCACTTCCACCATGTCA---TCTTATGTGCCAGTTTTATGTA 111713
| |||| ||||||||||| || || || || |||||| || ||||| ||
Sbjct 18497 TCGACATT-CCTAAAATGGCACTACCTCCTTGCCATTGTCTTAT---TCAATTTTACGT- 18443
Query 111714 CACGACGGGATGCTT-TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGT 111772
| | ||| || ||||| || ||||||| |||| || ||||| |||||||| ||
Sbjct 18442 GGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGT 18383
Query 111773 TCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCT 111832
|| |||||||| |||||||| || | || |||| | | || ||||| | |||||| |
Sbjct 18382 GCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAATTT 18323
Query 111833 CAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892
|| || || || || | ||| | || ||||| |||||||| ||| || |||||
Sbjct 18322 AAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGA 18263
Query 111893 TGCACTTAAAACACAGTTGAAGCG 111916
| || ||| || ||||| ||
Sbjct 18262 GCCGCTAAAAGAGCAATTGAATCG 18239
>seq50502
Length=11567
Score = 125 bits (138), Expect = 2e-23
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542
|||| ||| | ||||||| ||||||| |||||||| ||||||||| |||| |||
Sbjct 4936 TTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGGAATTTTCTTTAGTGGAAGTTTT 4877
Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602
|| || |||||| |||||||||| | ||| ||||| ||| |||| |||||||||||
Sbjct 4876 GCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCCTGGTTTAACATTTTCAAATGAA 4817
Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|||||| || ||||| || |||||| |||||||| |||
Sbjct 4816 TTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGCATGT 4775
>seq84576
Length=9936
Score = 91.5 bits (100), Expect = 4e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 12829 CCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACA 12888
|||||||| | | ||||||||||||||||||||| ||||| |||| | | ||| ||
Sbjct 2603 CCAAATGTTAATGCATCCATGTCTTCAGTTGCTGTAGCATAAACTTTACTAGCTTTAACT 2544
Query 12889 TATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTA 12946
| ||||||||| ||||| || ||||||||||||| |||| || | |||||||
Sbjct 2543 AAAGCAGCACATTGTGCTTCAGCTTCACATGGTGCTTCAACGTATGGTACACCCATTA 2486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1301127694435908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |