Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 181 9e-41
seq116239 123 2e-23
>seq69808
Length=9325
Score = 181 bits (200), Expect = 9e-41
Identities = 727/1115 (65%), Gaps = 45/1115 (4%)
Strand=Plus/Minus
Query 132203 TGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAAC 132262
||||| |||| | ||||||| ||||| || | || || | ||| ||| |
Sbjct 7934 TGATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAA 7875
Query 132263 GGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCA 132322
||||| || |||||||| || || || ||||| ||||| | ||| || ||||| |||
Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815
Query 132323 ATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTC 132382
|| || || ||||| || | || ||| |||| |||||| || | ||| |||
Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755
Query 132383 CACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCA 132442
|| |||||| | | | | ||||||||| |||| | || | ||| || |
Sbjct 7754 CATAGATCAGTTGGT---GTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACT 7698
Query 132443 GGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACTC 132502
|| ||||| | ||| | || |||| || | ||||| || | ||| || | |||
Sbjct 7697 GGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTA-GCCTC 7639
Query 132503 -AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACT 132561
| |||||||||||||| || || | |||| | ||| |||| | ||||| || |||
Sbjct 7638 TAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACT 7579
Query 132562 GTCGTA-GGGCAA--ATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACC 132618
|| || ||| || |||||||| || ||||| || | || || | ||| |||||
Sbjct 7578 TTCATATGGGTAACGCATTAAAATA---AATGCATCAGCTAAGCCTTGTACGCCAATACC 7522
Query 132619 GATGGGTCTATGTTTAAAATTCGATACTTGTGC-GCTAGTCAGCGGATAAAAGTTTTTGT 132677
|| |||| ||| |||||| ||| || ||| || || | |||||| | || | |
Sbjct 7521 AATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGT-AAAGGATAATAATTAATAT 7463
Query 132678 CTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGT 132737
| || |||||||| | ||| | || |||| | | | |||| | || || ||| |
Sbjct 7462 CAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAAT 7403
Query 132738 CAAAGTTTTTAGTCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCAAATTGCA 132795
|| | |||||| | || || | ||||| ||| | ||||| || || ||||| ||
Sbjct 7402 CATATTTTTTA-----TCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACA 7348
Query 132796 TACGGCTGTCTCTTTATTATCGCT--ATACTGTACGATTTCTGCACACAAATTACTGTTT 132853
|| ||| | || | | ||| ||| | || ||||||| ||||| |||||| |
Sbjct 7347 AACAGCTATTTCAT--CTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACAT 7290
Query 132854 CGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTAC-GTTATCTTTATGCAACAT 132912
||| || | ||||| |||||| |||| ||| |||| |||||||| |||||
Sbjct 7289 TTAATGGTGCCAATGTTTTGTTGATTACTTTT-TCGATTACACGCATCTTTATATAACAT 7231
Query 132913 GTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACG-CCA 132971
|| ||| || ||||| || ||| ||| || | | | | | |||| |
Sbjct 7230 ATATGGAGTACCAGTTTCAACTTGAGATTCAAT--TATAGCAAACCATAATGAACGTGCT 7173
Query 132972 AAATTTGTTCTTTAAACTTG-CCCTGAGTCTCGTAACTTTCGTATAA--TCGCTCAAATT 133028
| ||||| | | | | | || | | | || || ||| ||||| | | |||||||
Sbjct 7172 TTAATTGTTTTATTAGCACGACCTTCATTTTCATA--TTTAATATAAAGTTGATCAAATT 7115
Query 133029 CTT--CGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTT 133086
|| | ||||| || | | ||||| ||||| | | |||||||| |||||||| ||
Sbjct 7114 TTTCACCCCATA-CATTAAAT-AAACCAGGACATTTATGTGGACACATTAATGACCAATT 7057
Query 133087 TTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATC 133146
|| | || || | |||||| || || || ||||||| ||| ||||||||||
Sbjct 7056 ATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATC 6997
Query 133147 GCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTC 133206
| ||| ||||| | || ||||| ||| || | ||||| |||||| ||
Sbjct 6996 CCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATC 6937
Query 133207 TGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCT-TTCCTT--TTACCTCCCTGATC 133263
||||||||| || || | ||| | || || || ||| || || ||||| || |||||
Sbjct 6936 TGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATC 6877
Query 133264 CACATGTCTA--AGCATGCTGTTGAAGACACGCAA 133296
|||| |||| | ||| | || |||||||| ||
Sbjct 6876 AACATATCTAGCAACAT--TATTAAAGACACGTAA 6844
>seq116239
Length=11340
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||||||||| | ||||||||||| |||||||||||| | ||||| | || || ||| |
Sbjct 4782 CAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCC 4723
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||||| || || | || ||| ||||||| ||||| |||||||| || || ||
Sbjct 4722 GTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGA 4663
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|||||| | |||||| | || |||||| | || |||| || | | |||||
Sbjct 4662 TCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTA 4603
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||||||||| ||||| ||| ||||||| ||
Sbjct 4602 CAACATTCAAAAGGAATCCACACTTCATTTGGT 4570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429237560100570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |