Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq69808 181 9e-41 seq116239 123 2e-23 >seq69808 Length=9325 Score = 181 bits (200), Expect = 9e-41 Identities = 727/1115 (65%), Gaps = 45/1115 (4%) Strand=Plus/Minus Query 132203 TGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAAC 132262 ||||| |||| | ||||||| ||||| || | || || | ||| ||| | Sbjct 7934 TGATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAA 7875 Query 132263 GGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCA 132322 ||||| || |||||||| || || || ||||| ||||| | ||| || ||||| ||| Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815 Query 132323 ATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTC 132382 || || || ||||| || | || ||| |||| |||||| || | ||| ||| Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755 Query 132383 CACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCA 132442 || |||||| | | | | ||||||||| |||| | || | ||| || | Sbjct 7754 CATAGATCAGTTGGT---GTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACT 7698 Query 132443 GGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACTC 132502 || ||||| | ||| | || |||| || | ||||| || | ||| || | ||| Sbjct 7697 GGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTA-GCCTC 7639 Query 132503 -AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACT 132561 | |||||||||||||| || || | |||| | ||| |||| | ||||| || ||| Sbjct 7638 TAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACT 7579 Query 132562 GTCGTA-GGGCAA--ATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACC 132618 || || ||| || |||||||| || ||||| || | || || | ||| ||||| Sbjct 7578 TTCATATGGGTAACGCATTAAAATA---AATGCATCAGCTAAGCCTTGTACGCCAATACC 7522 Query 132619 GATGGGTCTATGTTTAAAATTCGATACTTGTGC-GCTAGTCAGCGGATAAAAGTTTTTGT 132677 || |||| ||| |||||| ||| || ||| || || | |||||| | || | | Sbjct 7521 AATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGT-AAAGGATAATAATTAATAT 7463 Query 132678 CTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGT 132737 | || |||||||| | ||| | || |||| | | | |||| | || || ||| | Sbjct 7462 CAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAAT 7403 Query 132738 CAAAGTTTTTAGTCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCAAATTGCA 132795 || | |||||| | || || | ||||| ||| | ||||| || || ||||| || Sbjct 7402 CATATTTTTTA-----TCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACA 7348 Query 132796 TACGGCTGTCTCTTTATTATCGCT--ATACTGTACGATTTCTGCACACAAATTACTGTTT 132853 || ||| | || | | ||| ||| | || ||||||| ||||| |||||| | Sbjct 7347 AACAGCTATTTCAT--CTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACAT 7290 Query 132854 CGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTAC-GTTATCTTTATGCAACAT 132912 ||| || | ||||| |||||| |||| ||| |||| |||||||| ||||| Sbjct 7289 TTAATGGTGCCAATGTTTTGTTGATTACTTTT-TCGATTACACGCATCTTTATATAACAT 7231 Query 132913 GTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACG-CCA 132971 || ||| || ||||| || ||| ||| || | | | | | |||| | Sbjct 7230 ATATGGAGTACCAGTTTCAACTTGAGATTCAAT--TATAGCAAACCATAATGAACGTGCT 7173 Query 132972 AAATTTGTTCTTTAAACTTG-CCCTGAGTCTCGTAACTTTCGTATAA--TCGCTCAAATT 133028 | ||||| | | | | | || | | | || || ||| ||||| | | ||||||| Sbjct 7172 TTAATTGTTTTATTAGCACGACCTTCATTTTCATA--TTTAATATAAAGTTGATCAAATT 7115 Query 133029 CTT--CGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTT 133086 || | ||||| || | | ||||| ||||| | | |||||||| |||||||| || Sbjct 7114 TTTCACCCCATA-CATTAAAT-AAACCAGGACATTTATGTGGACACATTAATGACCAATT 7057 Query 133087 TTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATC 133146 || | || || | |||||| || || || ||||||| ||| |||||||||| Sbjct 7056 ATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATC 6997 Query 133147 GCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTC 133206 | ||| ||||| | || ||||| ||| || | ||||| |||||| || Sbjct 6996 CCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATC 6937 Query 133207 TGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCT-TTCCTT--TTACCTCCCTGATC 133263 ||||||||| || || | ||| | || || || ||| || || ||||| || ||||| Sbjct 6936 TGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATC 6877 Query 133264 CACATGTCTA--AGCATGCTGTTGAAGACACGCAA 133296 |||| |||| | ||| | || |||||||| || Sbjct 6876 AACATATCTAGCAACAT--TATTAAAGACACGTAA 6844 >seq116239 Length=11340 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||||||||| |||||||||||| | ||||| | || || ||| | Sbjct 4782 CAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCC 4723 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| || || | || ||| ||||||| ||||| |||||||| || || || Sbjct 4722 GTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGA 4663 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | |||||| | || |||||| | || |||| || | | ||||| Sbjct 4662 TCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTA 4603 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||| ||||| ||| ||||||| || Sbjct 4602 CAACATTCAAAAGGAATCCACACTTCATTTGGT 4570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429237560100570