Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 100 2e-16
>seq116239
Length=11340
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| ||| || ||||| |||||||| |||||||| || | |
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||||||| || || ||| |||| | || ||||| || ||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || ||||| || |||||| || || | | | ||||| |||||
Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCT--TTAACATTTTCAATTGTGTCAGACGGCTCAA 4729
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| || || |||||||| || | ||||| ||||||||||||||||||
Sbjct 4730 CCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTTG 4782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404429926189060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |