Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq100038 145 5e-30 seq25812 136 3e-27 seq116239 116 2e-21 seq31392 113 3e-20 seq105375 104 2e-17 >seq100038 Length=3326 Score = 145 bits (160), Expect = 5e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || ||||| ||||| | || | ||||| || ||||||||||| || || ||| Sbjct 1437 AATGTTAATCGAAATGTAACCGATGTTTTCTATCGTTACAAAATGCCACGTATTAATGCC 1496 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||||| || || || ||||| ||||||||||||||||| || |||||| ||||||| || Sbjct 1497 AAGGTTGAAGGAAAAGGAAATGGTATTAAAACCGTCATCGTTAACATGGCTGAAGTTGCA 1556 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || || | ||||| || || || || || || |||||||| || || ||| | || ||| Sbjct 1557 AAAGCCATTGGACGTCCAGCAACTTATCCAACAAAATATTTTGGATGTGAATTGGGTGCT 1616 Query 6354 CAGACGCAGTTTGATCACAA 6373 || || || |||||| |||| Sbjct 1617 CAAACTCAATTTGATTACAA 1636 >seq25812 Length=6288 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2681 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTCGT 2622 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2621 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2587 >seq116239 Length=11340 Score = 116 bits (128), Expect = 2e-21 Identities = 170/239 (71%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||| ||| ||||| | | ||| | ||||||||||| ||| ||||||||||| ||| Sbjct 4544 CAATAATT-CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTG 4602 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||| ||||| | | || || ||||| ||||| ||||| || | ||||||||| Sbjct 4603 TAATCCGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGA 4662 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | || | |||||| ||||| ||| ||| || ||||| | | || || Sbjct 4663 TCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGAC 4722 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || |||||||| ||||| || || || ||||| || || |||||||| || Sbjct 4723 GGCTCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 >seq31392 Length=9763 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||| |||||||||||||||||| |||||||||||||||| | | |||||||| Sbjct 3234 AAGCCCATTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGAGACAGAAGGAATCTCGT 3293 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||| |||||||||||||||||| Sbjct 3294 TAATCCATTTATGCGCATCACTAATTAGATGACGA 3328 >seq105375 Length=2155 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 1852 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1793 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 1792 CCCAATATTTAGCCTTA 1776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334403071365314