Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq100038 145 5e-30
seq25812 136 3e-27
seq116239 116 2e-21
seq31392 113 3e-20
seq105375 104 2e-17
>seq100038
Length=3326
Score = 145 bits (160), Expect = 5e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
|| || ||||| ||||| | || | ||||| || ||||||||||| || || |||
Sbjct 1437 AATGTTAATCGAAATGTAACCGATGTTTTCTATCGTTACAAAATGCCACGTATTAATGCC 1496
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||||| || || || ||||| ||||||||||||||||| || |||||| ||||||| ||
Sbjct 1497 AAGGTTGAAGGAAAAGGAAATGGTATTAAAACCGTCATCGTTAACATGGCTGAAGTTGCA 1556
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
|| || | ||||| || || || || || || |||||||| || || ||| | || |||
Sbjct 1557 AAAGCCATTGGACGTCCAGCAACTTATCCAACAAAATATTTTGGATGTGAATTGGGTGCT 1616
Query 6354 CAGACGCAGTTTGATCACAA 6373
|| || || |||||| ||||
Sbjct 1617 CAAACTCAATTTGATTACAA 1636
>seq25812
Length=6288
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2681 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTCGT 2622
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2621 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2587
>seq116239
Length=11340
Score = 116 bits (128), Expect = 2e-21
Identities = 170/239 (71%), Gaps = 1/239 (0%)
Strand=Plus/Plus
Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141
|||| ||| ||||| | | ||| | ||||||||||| ||| ||||||||||| |||
Sbjct 4544 CAATAATT-CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTG 4602
Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201
||||| ||||| | | || || ||||| ||||| ||||| || | |||||||||
Sbjct 4603 TAATCCGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGA 4662
Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261
|| | || | |||||| ||||| ||| ||| || ||||| | | || ||
Sbjct 4663 TCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGAC 4722
Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||||| || |||||||| ||||| || || || ||||| || || |||||||| ||
Sbjct 4723 GGCTCAACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
>seq31392
Length=9763
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
|||||| |||||||||||||||||| |||||||||||||||| | | ||||||||
Sbjct 3234 AAGCCCATTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGAGACAGAAGGAATCTCGT 3293
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||| ||||||||||||||||||
Sbjct 3294 TAATCCATTTATGCGCATCACTAATTAGATGACGA 3328
>seq105375
Length=2155
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 1852 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1793
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 1792 CCCAATATTTAGCCTTA 1776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334403071365314
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |