Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 675 0.0
seq50502 194 2e-44
seq3775 102 1e-16
seq41910 89.7 7e-13
>seq69808
Length=9325
Score = 675 bits (748), Expect = 0.0
Identities = 1273/1852 (69%), Gaps = 34/1852 (2%)
Strand=Plus/Minus
Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930
|| ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| ||||||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990
||||| |||||| |||| | || || |||| ||| ||||| | ||||||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTG--TGGAATTT 62048
||||| ||||| || || | ||||||||||||| || | || |||| || |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 62049 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 62104
|||||| |||||||| || || | || | || ||| | || | |||| | ||
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013
Query 62105 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164
|| |||| || ||| || || |||| || || ||||||| |||||| | || |||
Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953
Query 62165 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62223
||| || | || ||| | ||||||||| |||||| ||||| ||||| | |||
Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894
Query 62224 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62283
|| ||||| ||||| || || | || || ||||| || |||||||| || |||||
Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834
Query 62284 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62343
||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| ||
Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774
Query 62344 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62403
||| || | ||||||||| ||||| | ||| ||| ||
Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714
Query 62404 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463
||||| | || | ||||| ||||||| || |||| || | |||||||
Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654
Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523
||| ||||| |||||||||||||| |||||||| ||||| || || | | ||||| |
Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594
Query 62524 TTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 62583
|| ||||| || ||| |||| ||| | | |||||| || || ||||| |||||
Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534
Query 62584 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62643
|| |||||||| || |||| ||| | ||| || ||| |||||||| | ||||||
Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474
Query 62644 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62700
|||||||||||| ||||||||||| | ||||| | |||||| |||| || || ||
Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417
Query 62701 CAGTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAATGCAACAGATGC 62757
||||| ||||||| || || || | |||||||| || || |||| || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 62758 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62817
| ||||||||| |||| |||| | | | ||||| | || || || || |||||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297
Query 62818 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 62877
|||||| || ||||| || | |||||||||||||| ||| ||||||||||| |||||
Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237
Query 62878 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 62937
| || |||||||||||||||||| |||||||| || || || ||| | ||
Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177
Query 62938 AGCCTTTATT-ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 62996
|| || ||| | ||| | | | ||| |||| ||| |||| | | | || |
Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118
Query 62997 ACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACT 63056
| | || ||||| ||||| | |||||||||| || |||||||| || ||||| |
Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058
Query 63057 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63116
| ||| | | || ||||||||||| | ||| |||||||| | || ||||| ||
Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998
Query 63117 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63176
| || | | |||||| || |||| ||||| ||||| | || | || | | |||||
Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938
Query 63177 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63236
| | |||||| ||||| || || || || | | || || ||||| || || || ||||
Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878
Query 63237 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 63296
| | |||||||| |||||| | || | |||||||| | | |||||| ||| |||
Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818
Query 63297 CATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCT 63352
|||| || || | || | | || | | ||| || || ||| ||| || ||
Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762
Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412
|| || || || |||| || || | ||||||| ||| | | | | | || || ||
Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702
Query 63413 ATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471
|| |||||| | || |||||| || |||||| || | ||| |||||| ||| |
Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643
Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531
||| |||||| || || || || |||||||| | ||| || | ||||| || ||
Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583
Query 63532 CTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590
|||||| | | || ||| | || | || || || ||||| |||||||||||||| |
Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524
Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650
| || ||||||||| | || || || ||||| ||||| || ||| |||| || ||||
Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464
Query 63651 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702
||||||||||||| || || ||| || || || |||||||| |||| ||
Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412
>seq50502
Length=11567
Score = 194 bits (214), Expect = 2e-44
Identities = 206/272 (76%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||| | ||| || ||||| |||| || |||||||| ||||||| |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040
|||||||| || || || || | || || ||||| ||||||||| || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100
| | ||||||||| || || || ||| |||||||||||| || || |||||| ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 33101 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 33160
||||| ||| | |||| ||| | ||| | | |||||||| |||| ||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 33161 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
|||||| ||||||||||||||||| || ||||
Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 150 bits (166), Expect = 2e-31
Identities = 194/264 (73%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701
|||||| || ||||| |||||||| ||||| || || || || || || | ||||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761
||| || ||||| || | || ||||||| || || ||||| | ||||||||| | ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821
||| |||| ||||||||||||||| || || ||||| ||||||| ||| || || |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 32822 ACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878
| || | | | | || ||||| | |||||||||||| || ||||| ||||| ||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 32879 CATTGTCTCTATAGCATTAAAGAG 32902
| ||| || |||||||| || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020
>seq3775
Length=22988
Score = 102 bits (112), Expect = 1e-16
Identities = 166/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 155710 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 155769
|||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | ||
Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661
Query 155770 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 155829
||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| ||
Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601
Query 155830 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATTATGGCAGTCT-TTC-TA 155887
|| |||| || | ||||||| ||| ||| ||||| || | ||| | ||| ||
Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543
Query 155888 ATGGGTTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 155941
||||| ||||| ||| | || | || |||||| || ||||| ||| |||||
Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTCA 6490
>seq41910
Length=65838
Score = 89.7 bits (98), Expect = 7e-13
Identities = 78/96 (81%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 27523 CTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATATGTGTATT 27582
|||| |||||||||||||||||||||||||||| ||||| || | |||| ||||
Sbjct 6030 CTTG-CCTGAGTTAATGATCTCCAATCCATATTTGCGCTACCAAGGTAAAAATGTTGTCC 5972
Query 27583 ATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618
|||| |||||| | |||||||||||| ||||| ||
Sbjct 5971 ATCAACTATCCACAGTTTTGTATGAAGTACTCCACC 5936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632576258202400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |