Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq69808 675 0.0 seq50502 194 2e-44 seq3775 102 1e-16 seq41910 89.7 7e-13 >seq69808 Length=9325 Score = 675 bits (748), Expect = 0.0 Identities = 1273/1852 (69%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| |||||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 ||||| |||||| |||| | || || |||| ||| ||||| | |||||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTG--TGGAATTT 62048 ||||| ||||| || || | ||||||||||||| || | || |||| || ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 62049 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATG 62104 |||||| |||||||| || || | || | || ||| | || | |||| | || Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013 Query 62105 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164 || |||| || ||| || || |||| || || ||||||| |||||| | || ||| Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953 Query 62165 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62223 ||| || | || ||| | ||||||||| |||||| ||||| ||||| | ||| Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894 Query 62224 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62283 || ||||| ||||| || || | || || ||||| || |||||||| || ||||| Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834 Query 62284 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62343 ||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| || Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774 Query 62344 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62403 ||| || | ||||||||| ||||| | ||| ||| || Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714 Query 62404 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 ||||| | || | ||||| ||||||| || |||| || | ||||||| Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 ||| ||||| |||||||||||||| |||||||| ||||| || || | | ||||| | Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594 Query 62524 TTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 62583 || ||||| || ||| |||| ||| | | |||||| || || ||||| ||||| Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534 Query 62584 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62643 || |||||||| || |||| ||| | ||| || ||| |||||||| | |||||| Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474 Query 62644 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62700 |||||||||||| ||||||||||| | ||||| | |||||| |||| || || || Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417 Query 62701 CAGTTTGAGAAAATCAAATCGCCCAT---CTATTACAAACATGTTCAATGCAACAGATGC 62757 ||||| ||||||| || || || | |||||||| || || |||| || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 62758 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62817 | ||||||||| |||| |||| | | | ||||| | || || || || ||||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 62818 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 62877 |||||| || ||||| || | |||||||||||||| ||| ||||||||||| ||||| Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 62878 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 62937 | || |||||||||||||||||| |||||||| || || || ||| | || Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 62938 AGCCTTTATT-ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 62996 || || ||| | ||| | | | ||| |||| ||| |||| | | | || | Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118 Query 62997 ACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACT 63056 | | || ||||| ||||| | |||||||||| || |||||||| || ||||| | Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058 Query 63057 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63116 | ||| | | || ||||||||||| | ||| |||||||| | || ||||| || Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998 Query 63117 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63176 | || | | |||||| || |||| ||||| ||||| | || | || | | ||||| Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938 Query 63177 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63236 | | |||||| ||||| || || || || | | || || ||||| || || || |||| Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878 Query 63237 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 63296 | | |||||||| |||||| | || | |||||||| | | |||||| ||| ||| Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818 Query 63297 CATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCT 63352 |||| || || | || | | || | | ||| || || ||| ||| || || Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || |||| || || | ||||||| ||| | | | | | || || || Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702 Query 63413 ATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || |||||| | || |||||| || |||||| || | ||| |||||| ||| | Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 ||| |||||| || || || || |||||||| | ||| || | ||||| || || Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583 Query 63532 CTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 |||||| | | || ||| | || | || || || ||||| |||||||||||||| | Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650 | || ||||||||| | || || || ||||| ||||| || ||| |||| || |||| Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464 Query 63651 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 ||||||||||||| || || ||| || || || |||||||| |||| || Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATT 6412 >seq50502 Length=11567 Score = 194 bits (214), Expect = 2e-44 Identities = 206/272 (76%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | ||| || ||||| |||| || |||||||| ||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||| || || || || | || || ||||| ||||||||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 | | ||||||||| || || || ||| |||||||||||| || || |||||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 33101 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 33160 ||||| ||| | |||| ||| | ||| | | |||||||| |||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 33161 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 |||||| ||||||||||||||||| || |||| Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 150 bits (166), Expect = 2e-31 Identities = 194/264 (73%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701 |||||| || ||||| |||||||| ||||| || || || || || || | |||||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761 ||| || ||||| || | || ||||||| || || ||||| | ||||||||| | || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 ||| |||| ||||||||||||||| || || ||||| ||||||| ||| || || | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 32822 ACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | || | | | | || ||||| | |||||||||||| || ||||| ||||| || Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 32879 CATTGTCTCTATAGCATTAAAGAG 32902 | ||| || |||||||| || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020 >seq3775 Length=22988 Score = 102 bits (112), Expect = 1e-16 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 155710 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATG 155769 |||||||||||| || | ||| ||||||| | ||| |||| ||||| ||| | || Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661 Query 155770 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 155829 ||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| || Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601 Query 155830 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATTATGGCAGTCT-TTC-TA 155887 || |||| || | ||||||| ||| ||| ||||| || | ||| | ||| || Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543 Query 155888 ATGGGTTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 155941 ||||| ||||| ||| | || | || |||||| || ||||| ||| ||||| Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTCA 6490 >seq41910 Length=65838 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 27523 CTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATATGTGTATT 27582 |||| |||||||||||||||||||||||||||| ||||| || | |||| |||| Sbjct 6030 CTTG-CCTGAGTTAATGATCTCCAATCCATATTTGCGCTACCAAGGTAAAAATGTTGTCC 5972 Query 27583 ATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618 |||| |||||| | |||||||||||| ||||| || Sbjct 5971 ATCAACTATCCACAGTTTTGTATGAAGTACTCCACC 5936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632576258202400