Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8255 91.5 1e-13 seq71188 87.8 2e-12 >seq8255 Length=4873 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG 25079 ||||| ||||| ||||||| | ||||| || | | ||||| || | | |||| Sbjct 388 TTGACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAA--AATGAAA 445 Query 25080 CAA--AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 | ||||| ||||||||| | | ||||| |||||||||| | ||||| || | Sbjct 446 AACCTAAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTG 505 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 |||||||||| |||||| ||| || | ||||||||| |||||||| ||||| || | Sbjct 506 GCAAACAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCC 565 Query 25198 TACATTTAGTGCT 25210 | || || || || Sbjct 566 TTCACTTGGTCCT 578 >seq71188 Length=12772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 105559 CACGGATTCCATGTACACGAATTCGGTGATACCAGCAATGGCTGTACATCAGCAGGCGAG 105618 || |||||||||||||||||||||||||||| || |||||| |||||||| || || | | Sbjct 1493 CATGGATTCCATGTACACGAATTCGGTGATAACACCAATGGGTGTACATCTGCTGGAGCG 1552 Query 105619 CATTTTAATCC 105629 || |||||||| Sbjct 1553 CACTTTAATCC 1563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432624049726610