Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq50502 194 2e-44 seq80247 131 2e-25 seq129088 127 2e-24 >seq50502 Length=11567 Score = 194 bits (214), Expect = 2e-44 Identities = 223/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 ||||| || ||||| ||| ||| |||||||| | || ||| ||||||| || ||| Sbjct 4722 ATTTCAATGACTCTTTCATTGCTTGGCTTTTGTACTAAATGCTTGAACATTAAACATGCA 4781 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || ||| | ||||| || ||||| || || ||||| ||||||||||| || Sbjct 4782 AAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAATGTTAAACCAGGC 4841 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | ||||||||| || | ||||||||| | |||||||| ||| ||| || || ||| Sbjct 4842 ATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTAAAGAAAATTCCT 4901 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || || ||||| || | ||| | ||| | ||||| || || ||||| |||||| Sbjct 4902 TCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGCAGATTTACTTGCAATCCAT 4961 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 ||||||||||||||||||||| |||| ||| |||| |||||| ||||| || || ||| Sbjct 4962 GATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCAATAGCATTGAAAAGG 5021 Score = 174 bits (192), Expect = 2e-38 Identities = 205/274 (75%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||| || || || ||||| | |||||||| ||||| ||||| || ||| Sbjct 5110 GAATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATT 5169 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 |||||||| || || || ||||| | ||||| || || || ||||||||| ||||| Sbjct 5170 GCAATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGT 5229 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || ||||||||||| || |||||||| || ||||||||||| || || | ||| Sbjct 5230 TCAACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAA 5289 Query 93533 ATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGAT 93590 |||||||| ||||| | | |||| || ||||| | | | ||||||||| | || Sbjct 5290 ATAAAATGACGTTCTCCAC-TAGTTAA-TTTTTCCCAGTGAGCCATATCTTTTGATAAAT 5347 Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | |||||||| || |||||||| |||||||| || Sbjct 5348 CAACTTCTTCAACTGTCCAAAATGATGCTTCAGC 5381 >seq80247 Length=1175 Score = 131 bits (144), Expect = 2e-25 Identities = 95/108 (88%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 970 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 911 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||||||||||||||||| |||||| || || || || ||| Sbjct 910 GTGGGTTCGAACCCCACACCTGAC--ATTATTTTTAGATTTATTTTTG 865 >seq129088 Length=1455 Score = 127 bits (140), Expect = 2e-24 Identities = 94/108 (87%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1215 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1156 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||||||||||||||||| |||| | || || || || ||| Sbjct 1155 GTGGGTTCGAACCCCACACCTGAC--ATTACTTTTAGATTTATTTTTG 1110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555932972456560