Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 194 2e-44
seq80247 131 2e-25
seq129088 127 2e-24
>seq50502
Length=11567
Score = 194 bits (214), Expect = 2e-44
Identities = 223/300 (74%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
||||| || ||||| ||| ||| |||||||| | || ||| ||||||| || |||
Sbjct 4722 ATTTCAATGACTCTTTCATTGCTTGGCTTTTGTACTAAATGCTTGAACATTAAACATGCA 4781
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|| || ||| | ||||| || ||||| || || ||||| ||||||||||| ||
Sbjct 4782 AAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAATGTTAAACCAGGC 4841
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217
| | ||||||||| || | ||||||||| | |||||||| ||| ||| || || |||
Sbjct 4842 ATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTAAAGAAAATTCCT 4901
Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277
|| || || ||||| || | ||| | ||| | ||||| || || ||||| ||||||
Sbjct 4902 TCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGCAGATTTACTTGCAATCCAT 4961
Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337
||||||||||||||||||||| |||| ||| |||| |||||| ||||| || || |||
Sbjct 4962 GATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCAATAGCATTGAAAAGG 5021
Score = 174 bits (192), Expect = 2e-38
Identities = 205/274 (75%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||| || || || ||||| | |||||||| ||||| ||||| || |||
Sbjct 5110 GAATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATT 5169
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
|||||||| || || || ||||| | ||||| || || || ||||||||| |||||
Sbjct 5170 GCAATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGT 5229
Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532
|| || ||||||||||| || |||||||| || ||||||||||| || || | |||
Sbjct 5230 TCAACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAA 5289
Query 93533 ATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGAT 93590
|||||||| ||||| | | |||| || ||||| | | | ||||||||| | ||
Sbjct 5290 ATAAAATGACGTTCTCCAC-TAGTTAA-TTTTTCCCAGTGAGCCATATCTTTTGATAAAT 5347
Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
| |||||||| || |||||||| |||||||| ||
Sbjct 5348 CAACTTCTTCAACTGTCCAAAATGATGCTTCAGC 5381
>seq80247
Length=1175
Score = 131 bits (144), Expect = 2e-25
Identities = 95/108 (88%), Gaps = 4/108 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 970 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 911
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370
|||||||||||||||||||||||| |||||| || || || || |||
Sbjct 910 GTGGGTTCGAACCCCACACCTGAC--ATTATTTTTAGATTTATTTTTG 865
>seq129088
Length=1455
Score = 127 bits (140), Expect = 2e-24
Identities = 94/108 (87%), Gaps = 4/108 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 1215 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1156
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370
|||||||||||||||||||||||| |||| | || || || || |||
Sbjct 1155 GTGGGTTCGAACCCCACACCTGAC--ATTACTTTTAGATTTATTTTTG 1110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555932972456560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |