Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq69808 215 4e-51 seq116239 145 6e-30 seq34035 132 4e-26 seq8255 96.9 3e-15 seq98857 84.2 2e-11 >seq69808 Length=9325 Score = 215 bits (238), Expect = 4e-51 Identities = 717/1096 (65%), Gaps = 31/1096 (3%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||||| ||||| | || || || || || || ||||| ||||| || Sbjct 8279 TTATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCA 8220 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| ||||| ||||| | | || || | || | || | || | ||| Sbjct 8219 GTTTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGT 8160 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | | | |||||||||||||||||| |||||||| || | || ||||| |||||| Sbjct 8159 TCAGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCC 8100 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || |||| ||| |||||||| || ||||| || | |||| | | Sbjct 8099 ATTTGCATTTGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGAT 8040 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 |||||||| | ||||| | || | || |||||||| ||| | ||| ||| Sbjct 8039 TTTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCATA 7980 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | | |||| |||| | ||||| | ||| | | || | ||| | Sbjct 7979 TCATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAACA 7920 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || ||||| | || || || ||| || || || || | |||||||| ||||| Sbjct 7919 AATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATTCG 7860 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTT 129258 || || ||||| ||||| || |||| || || ||||| || | | | || ||| Sbjct 7859 TTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTT 7800 Query 129259 CGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTGG 129316 || | ||| || |||||||| | || ||| | || |||| | ||| | ||| || | Sbjct 7799 CGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATA--GATCAGTTG 7742 Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACTGGCGGGACTGGAAAAG 129372 |||| | |||||||| || ||||| | |||||| | |||||| | | | | | Sbjct 7741 GTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATCATATG 7682 Query 129373 TAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432 | | || || ||| || || ||||||||||| || || ||||| ||| || Sbjct 7681 TTTCATA--TGAACCATATAA--TTCAGCTAATTCGCAACTAGCCTCTAATGCACCATAA 7626 Query 129433 TAAATTGTTTCGGCAAT-TTTGGTGTTCAACACTTTG-GCCTGGTCGCTTTCGTACGGCA 129490 ||||||||||| ||| |||| || | | | || || | || ||||| || || Sbjct 7625 TAAATTGTTTCA--AATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGT 7568 Query 129491 TACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTT 129550 ||||| | ||||| || || || ||||| | || | ||| || |||||||| Sbjct 7567 AACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGAC 7508 Query 129551 TTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 ||| ||||||| ||| || ||||| || || || || |||||||| || | Sbjct 7507 GAAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCA 7448 Query 129611 AATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACA 129669 |||| |||| |||||||| || || | ||| | ||| ||||| || | | | Sbjct 7447 AATTTCTTGTA-ACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTT---TTTA 7392 Query 129670 TC-GATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 || | ||| ||||| ||| | | ||| || || ||||| || || || |||| | Sbjct 7391 TCTGCTGTA-ACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTATTTCATC 7333 Query 129729 TTTGTCACTG--TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 | || ||| || || |||||||| | |||| ||||||| |||||||||||| || Sbjct 7332 TG-GTG-CTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCC--AA 7277 Query 129787 TGCTTT--TGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCG 129844 || ||| ||||||||||| || || |||||||| || | ||| || || || || | Sbjct 7276 TGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTACCAG 7217 Query 129845 TTTCGACTTGCGTTTC 129860 |||| ||||| | ||| Sbjct 7216 TTTCAACTTGAGATTC 7201 >seq116239 Length=11340 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||||||||| || ||||| | || | || || || | Sbjct 4781 AAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCG 4722 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| ||| |||||||||||||| || |||||||| ||| Sbjct 4721 TCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGAT 4662 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || ||||| || || || || |||||| | || | || |||||| Sbjct 4661 CAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTAC 4602 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| |||||||| | ||||| ||| | || | ||||| || Sbjct 4601 AACATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGG 4552 >seq34035 Length=19351 Score = 132 bits (146), Expect = 4e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 |||| || | || ||| ||||| || |||||||||||| | || || || || | || Sbjct 10339 TTTTCTAGCTATGCAAATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACA 10398 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 ||||| || ||| || | ||||| | || || | ||| || || ||||| || || Sbjct 10399 CTTGAGGTCGAACCCTCTGATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAA 10458 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| || |||||||||||| | || || || || ||||| | |||||| || Sbjct 10459 GGTATTCCTCCAGATCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGA 10518 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | || ||||| ||||| |||||||| || || | |||||||| | || | || Sbjct 10519 ACCTTATCTGATTATAACATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGA 10578 Query 22441 GGAGGT 22446 |||||| Sbjct 10579 GGAGGT 10584 >seq8255 Length=4873 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || ||||| || ||||| | ||||| ||| | || || ||| | | || ||| Sbjct 388 TTGACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAA 447 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 | ||||||| |||||| || | | ||||| || ||||| | | | || || || ||| Sbjct 448 CCTAAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGC 507 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 ||||| || | ||| || ||| ||| |||||||||||||||||| ||||| ||| | Sbjct 508 AAACAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTT 567 Query 22420 CATTTAGT 22427 || || || Sbjct 568 CACTTGGT 575 >seq98857 Length=3708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || ||||| | ||||| |||| || |||| ||| | | Sbjct 775 ATGCAAATCTTTGTTAAGACATTAACTAGAAAAACAATCACCCTCAAAGTTGAACCTTTC 716 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | || |||| || || |||||||| |||||||| ||||| | |||||| Sbjct 715 GATAGAATTGAAAATATTAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCTAGATCAA 656 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || | | || |||||| | | ||| || || || ||||||||| Sbjct 655 CAAAGATTAATCGTCGAAGGAAAACAGCTCTAAGATAGTCGTACATGATCTGATTACAAC 596 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 595 ATCCAAAAGGA 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419046143207110