Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 163 5e-35
seq34035 125 1e-23
seq98857 87.8 3e-12
>seq116239
Length=11340
Score = 163 bits (180), Expect = 5e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| ||||| || || | ||||| || || ||||| || ||||| ||||| ||||| |
Sbjct 4550 TTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCG 4609
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| | |||||| ||||| || || ||||| || || || || | | |||||| || ||||
Sbjct 4610 ACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTG 4669
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||||||||||||||||||||||||||| || || || || ||||| | | || |
Sbjct 4670 GAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAA 4729
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
| ||||| || || |||||||| || | || || || || ||||||||| ||
Sbjct 4730 CCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTTG 4782
>seq34035
Length=19351
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| |||||||| | ||| || || | || ||||||||||||||||||||||| ||
Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | || || || ||||| || | | |||||| || || |||
Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| || ||||| ||||| || || || || || || || | | ||| ||
Sbjct 10463 ATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACC 10404
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || ||||| || || || || || || || |||||||||||
Sbjct 10403 TCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCAT 10357
>seq98857
Length=3708
Score = 87.8 bits (96), Expect = 3e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329
||| ||||||||||| ||||| || ||| | | ||||| | ||| || || |||
Sbjct 584 CTCCTTTTGGATGTTGTAATCAGATCATGTACGACTATCTTAGAGCTGTTTTCCTTCGAC 643
Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389
|| | ||||||||| || | ||||| || ||||| ||||||||||| ||||| |
Sbjct 644 GATTAATCTTTGTTGATCTAGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTAATATT 703
Query 68390 CTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|| || | || | ||| |||| | |||||| ||||||| || | ||||| ||
Sbjct 704 TTCAATTCTATCGAAAGGTTCAACTTTGAGGGTGATTGTTTTTCTAGTTAATGTCTTAAC 763
Query 68450 GAATATCTGCATT 68462
|| || ||||||
Sbjct 764 AAAGATTTGCATT 776
Score = 86.0 bits (94), Expect = 1e-11
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385
|||| || | ||||||||| || || ||||| || ||||||||||| ||||||||||| |
Sbjct 43 CGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTTGCCTTAA 102
Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || || || | || ||| || || | |||||| |||||||| ||
Sbjct 103 CATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGATTGTTTTTCCAGT 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920086815797680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |