Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq116239 129 5e-25 seq34035 120 3e-22 seq8255 100 2e-16 >seq116239 Length=11340 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 ||| || || ||||| | | ||| ||||| | || ||||| ||||||||||||||||| Sbjct 4548 AATTCCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATC 4607 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || || | | ||| || | ||| || ||||| | || | ||| ||||| || || Sbjct 4608 CGACAATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGG 4667 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| ||||||| ||| | | ||||| ||||| | | || Sbjct 4668 TGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTC 4727 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || | ||||||||||||||||||||| Sbjct 4728 AACCTCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCAT 4778 >seq34035 Length=19351 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | || || |||||||| ||||| ||||| | || || ||| ||| Sbjct 10565 ACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTTCGTCCATCCTCA 10506 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||||||||||||| | || | ||| ||||| || |||||||| |||||||| || Sbjct 10505 AGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 10446 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | ||||| || || | || |||||| || | || | || || Sbjct 10445 ATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGTGTTATGGTCTTC 10386 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||| ||||| |||||||| Sbjct 10385 CCTGTAAGAGTTTTAACAAATATCTGCAT 10357 >seq8255 Length=4873 Score = 100 bits (110), Expect = 2e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||||||| | |||||| ||||| | |||||| ||| Sbjct 563 GTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGACCATCTTTCAATTGTTTGCCA 504 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | |||||||||| || || | | ||||||||| ||| || ||||| Sbjct 503 GCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCTTTGTCTAGAATTTTAGGTTTT 444 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | || || |||||| || | |||||| |||| || | || || || |||| Sbjct 443 TCATTTTTAATGGTGTCTGTTGGTTCGACTTCCAAAGTGATGGTCTTACCAGTCA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419451883001928