Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq102974 113 2e-20 >seq102974 Length=1575 Score = 113 bits (124), Expect = 2e-20 Identities = 140/188 (74%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 52765 ATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCT-CCATTCA 52823 |||||| |||||||| || ||||||||||||||||| || || | || ||| ||||| Sbjct 1571 ATATGTTGAATATATTACCAATATTCGTATGCAAGCTGTAGGTCT-GAAGCTACCATTTG 1513 Query 52824 AAG---GTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTAC 52880 ||| || ||| |||| || || ||||| ||||||||| || || ||| |||| Sbjct 1512 AAGCACGTTCAA---ACCCAATCCCATGGATCAATGCATGGCTGGTGTCTGATAACGTAC 1456 Query 52881 AGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAG 52940 | ||||| ||||| ||| || | ||||| || || || || ||||||||||| ||| Sbjct 1455 AAGTTGCGCCACAAGAAGTTGAAGTCAGTTCTTATCTTGTTGGTCAAATTGACTCTCAAG 1396 Query 52941 TTGATACC 52948 | |||||| Sbjct 1395 TCGATACC 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169130264989836