Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq69808 161 1e-34 >seq69808 Length=9325 Score = 161 bits (178), Expect = 1e-34 Identities = 478/728 (66%), Gaps = 13/728 (2%) Strand=Plus/Minus Query 113902 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 113961 ||| || |||||||| ||||| | | || | |||||||||| | || || || Sbjct 7932 ATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGG 7873 Query 113962 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCAT 114021 |||||| | || || ||||| || ||||| || || || ||||| ||||| ||||| || Sbjct 7872 CTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAAT 7813 Query 114022 GAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CG 114079 | | || |||| ||| | || |||| ||| || || | | ||| | | Sbjct 7812 TAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCA 7753 Query 114080 TAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGC 114139 ||| | || || || | | |||||||||| | || || ||||||||| |||| Sbjct 7752 TAGATCAG-TTGGTGTTTTATT-CCACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695 Query 114140 GATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGG 114199 ||||| ||| |||| || |||| || | | || || |||||| | || ||||| | Sbjct 7694 GATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAAT 7635 Query 114200 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 114259 || | | ||| ||||| ||||| || | ||| | | || || || || ||| Sbjct 7634 GCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCA 7575 Query 114260 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 114319 | | | || ||||||||| |||| || | ||||| || || | |||||||| Sbjct 7574 TATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGT 7515 Query 114320 CGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAAC 114378 ||||| | | ||| || ||| || ||| | |||||| |||| |||| |||| Sbjct 7514 CGATGACGAAAATTTGATTTTTTTGCT-TCTGGTAAAGGATAATAATTAATATCAATAAT 7456 Query 114379 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 114438 |||| | |||| | || |||| ||||| | ||| | ||| |||| ||||| | | Sbjct 7455 TTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTT 7396 Query 114439 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 114498 | ||| | | ||| || || | || ||||| || | |||||| |||| | Sbjct 7395 TTTA---TCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTAT 7339 Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 ||||| | | || || | |||||| ||||||| ||| || ||||||||||| Sbjct 7338 TTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCC 7279 Query 114559 CAAGTTCTTTTGATTTGACTTTGTG--TTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 | ||| | |||||| ||||| | ||||||||||| || || | ||| ||||| || Sbjct 7278 AATGTTTTGTTGATT--ACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTA 7221 Query 114617 CCCGTCTC 114624 || || || Sbjct 7220 CCAGTTTC 7213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596358304365520